Hi, What is the specific editconf command should i use to calculate the dimensions of fitting box of the protein ?
Thanks and regards, KT On Fri, Feb 8, 2013 at 2:03 PM, Kieu Thu Nguyen <[email protected]>wrote: > Thank Tsjerk ! I mean that i want to determine the dimensions (x, y, z) of > the protein > > > On Fri, Feb 8, 2013 at 1:48 PM, Tsjerk Wassenaar <[email protected]>wrote: > >> Hi KT, >> >> What do you mean with size? >> >> - circumscribed radius: editconf >> - radius of gyration: g_gyrate >> - dimensions of fitting box: editconf >> - volume: g_sas >> >> Cheers, >> >> Tsjerk >> >> On Fri, Feb 8, 2013 at 5:55 AM, Kieu Thu Nguyen <[email protected] >> >wrote: >> >> > Dear all, >> > >> > I want to calculate the size of the protein. Which tool should i use for >> > this purpose ? >> > >> > Thanks and regards, >> > KT >> > -- >> > gmx-users mailing list [email protected] >> > http://lists.gromacs.org/mailman/listinfo/gmx-users >> > * Please search the archive at >> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> > * Please don't post (un)subscribe requests to the list. Use the >> > www interface or send it to [email protected]. >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > >> >> >> >> -- >> Tsjerk A. Wassenaar, Ph.D. >> >> post-doctoral researcher >> Biocomputing Group >> Department of Biological Sciences >> 2500 University Drive NW >> Calgary, AB T2N 1N4 >> Canada >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
