On 2/20/13 4:09 AM, Kieu Thu Nguyen wrote:
Dear all,
I do not know whether there is any difference between a big bilayer and the
other bilayer made from merging two small bilayers made before.
I make a bilayer from two methods:
(1) merging two small bilayers (made before) by the below command
genconf -f bilayer_small.gro -trj bilayer_small.xtc -nbox 2 1 1 -o
bilayer_double.gro
(2) make a big bilayer directly
With suitable equilibration (tens or hundreds of ns), the starting configuration
of the membrane is largely irrelevant.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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