Hi Vandna, Have you followed one of the tutorials? E.g. http://md.chem.rug.nl/~mdcourse/molmod2012/ or one of Justin's? It should give you al the background you need.
Cheers, Tsjerk On Sat, Feb 23, 2013 at 11:35 AM, vandna sharma <vsha...@imtech.res.in> wrote: > hi..thanx for the reply > > as i am very new to it ...i dont know much about the md.tpr....for sure i am > in the same directory i want to work in.. > but what i am not sure abt is, how to get this file ?? > > > > > -- > View this message in context: > http://gromacs.5086.n6.nabble.com/RMSF-protein-flexibility-tp5005815p5005817.html > Sent from the GROMACS Users Forum mailing list archive at Nabble.com. > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Biocomputing Group Department of Biological Sciences 2500 University Drive NW Calgary, AB T2N 1N4 Canada -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists