Hello all, Sorry if it is not the right place to ask the question, but i have a doubt about the topology for alkanes with MARTINI
Since in Martini - the default mapping is 4 AA -> 1 bead - that in the martini_"v2.0_solvents.itp file" it is stated that the DECANE has the same topology as dodecane mol modeled both with 3 beads (C1 with the same mass). It is not clear to me how I can differentiate the properties of decane and dodecane. Additionally, can i change of the mass of each bead the mass of Decane/3 in the itp file instead of the default mass for C1 (72 AMU) ? Thank you in advance Stephane-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
