Hi Rajiv, Square the values, sum them per residue and take the square root.
Cheers, Tsjerk On May 8, 2013 7:24 AM, "라지브간디" <[email protected]> wrote: Dear gmx users, I've done covariance matrix for backbone of protein using g_covar command. Also, can able to plot all projections through g_anaeig. However, I could only able to do -rmsf: plot the RMS fluctuation per atom of eigenvectors BUT i wants to do them per residue? How can i achieve this? In manual it shows -filt: command filter the trajectory to show only the motion along eigenvectors. How i do visualize this kind of motions? Rajiv -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
