Refs 11 and 12 from section 4.9.2 of the manual have the kind of content you are seeking, IIRC.
Mark On Sat, May 11, 2013 at 7:29 PM, Andrew DeYoung <[email protected]>wrote: > Hi, > > Please forgive me for this slightly off-topic question. Suppose I use the > particle mesh Ewald algorithm for the computation of electrostatic > interactions. It is often mentioned in the literature that the PME > algorithm scales as O(N logN), and that the electrostatic interactions are > the most computationally expensive part of MD. Is it thus reasonable to > say > that MD overall scales as O(N logN)? Or does MD overall scale in some > other > way? I have been having difficulty finding a textbook or paper that states > or estimates the scaling of MD. > > Thank you so much for your time! > > Andrew DeYoung > Carnegie Mellon University > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
