Alternatively, you can use editconf -f (tpr file) -o (pdb file) to convert .gro to .pdb, and then use the visualization tools such as Pymol to view it.
On Tue, May 21, 2013 at 1:01 AM, Vishal Kumar Jaiswal <[email protected]>wrote: > Vmd can visualise a GRO file directly without .tpr . I use it to visualise > gro files > > > On Tue, May 21, 2013 at 12:59 AM, Bao Kai <[email protected]> wrote: > > > HI, all, > > > > I have a small question here. I usually use ngmx to visualize the > > .gro or .trr file with a .tpr file. > > > > While after simulation, I use editconf to generate a new .gro file. > > Then I failed to visualize the new .gro file since the .tpr file did > > not work for the new .gro file now. > > > > I wonder if there is some other method to visualize the .gro file? > > > > Thank you very much. > > > > Best Regards, > > Kai > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
