Hi, THanks for your answers. I already seen the help for this command but when its write "g_rmsdist computes the root mean square deviation of atom distances, which has the advantage that* no fit is needed* like in standard RMS deviation as computed by g_rms" what mean excatly "no fit is needed"?? Because when you compute a RMSD calculation its necessary to align the structure so I am a bit confused when its write "no fit is needed". Fit is processed directly by the command?
I am sorry I am little confused. THanks a lot 2013/6/2 Mark Abraham <[email protected]> > See g_rmsdist -h > > Mark > > > On Sun, Jun 2, 2013 at 12:29 PM, Nawel Mele <[email protected]> wrote: > > > Hello everyone. > > > > During the calculation of the rms with g_rmsdist command , the reference > > and the current structure are aligned before calculating?? > > > > Regards, > > > > > > -- > > *Mlle* Mele Nawel > > Master 2 In Silico Drug Design > > University of Paris Diderot/Strasbourg > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- *Mlle* Mele Nawel Master 2 In Silico Drug Design University of Paris Diderot/Strasbourg -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
