On 6/15/13 6:21 AM, Kieu Thu Nguyen wrote:
Dear users,
I make a rectangle bilayer by doubling two equilibrated cubic boxes. But
after minimizing, the system have been crashed. I do not understand why. I
attach the em.mdp below
The list does not allow attachments. Either copy and paste or provide a link to
where the file can be downloaded. The .mdp file may or may not be useful. You
should carefully inspect the starting configuration for atomic overlap, and then
otherwise follow the instructions described here:
http://www.gromacs.org/Documentation/Terminology/Blowing_Up#Diagnosing_an_Unstable_System
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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