Hi everybody, My runs keep crashing despite energy minimisation and fiddling around with nstlist values. I have been looking in the Gromacs manual particularly the interaction ranges in the domain decomposition section, which mentions that simulations can stop with error messages about missing interactions and atoms moving too far. It says the interaction between two and multi body bonded (rmb) is set based on the initial configuration automatically. Is there a way that I could see what Gromacs is using as those values after the simulation crashes?
I am thinking of using -rdd to change that number and see whether the simulation is more successful, although it will most likely be slower. Please let me know where I can get that information! I am getting frustrated with all these crashing runs. -- View this message in context: http://gromacs.5086.x6.nabble.com/Membrane-Runs-Crashing-tp5009264p5009402.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
