Hi Tsjerk, Thank you for your reply. So, these are the eigenvectors. By any chance, can we obtain the covariance matrix containing the information of residue fluctuations I.e. the covariance information. Actually, it was needed to obtain the dot plot delta ri dot delta rj so I don't think so I can use the eigenvectors
Kind regards Ankita On Monday, July 1, 2013, Tsjerk Wassenaar wrote: > Hi Ankita, > > The fie contains the eigenvectors as > > x1 y1 z1 > x2 y2 z2 > ... > xN yN zN > > Hope it helps, > > Tsjerk > > > On Mon, Jul 1, 2013 at 1:38 AM, Ankita naithani > <ankitanaith...@gmail.com<javascript:;> > >wrote: > > > Hi, > > > > I wanted to know the exact format of covariance.dat file as generated by > > g_covar during covariance analysis. The file format mentioned in the > manual > > was not quite clear to understand. I need to use the matrix information n > > so needed to know how the data is stored. My matrix is for 1992 calpha > > atoms. > > > > It would be really helpful if someone could explain the file format. > > > > Kind regards, > > > > Ankita > > > > > > -- > > Ankita Naithani > > -- > > gmx-users mailing list gmx-users@gromacs.org <javascript:;> > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org <javascript:;> > . > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > -- > gmx-users mailing list gmx-users@gromacs.org <javascript:;> > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org <javascript:;>. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Ankita Naithani -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
