Hi Vinita, I would guess that the other bond would not be made anyway according to the criteria used by pdb2gmx. Or does it say it's making the bond? Does the bond appear in the .top file?
Cheers, Tsjerk On 7/8/13, Vinita Kumari <vinita2...@gmail.com> wrote: > Dear gromacs users, > I want to break two disulfide bonds of human insulin for gromacs > simulation.when i used the option 'pdb2gmx -ss' only one bond was prompted > for selection.If any one can help me plz reply to this mail as soon as > possible. > Thank you > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Tsjerk A. Wassenaar, Ph.D. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
