On 9/21/13 2:47 PM, Atila Petrosian wrote:
Dear Justin

Thanks for your reply.

Ok. You are right. There is no "time" during EM.

For example, if I use nstep = 10,000 and emstep = 0.01,

what means of Step size in this case, exactly?

Please give me more explanation.


A quick Google search turns up useful information, and Wikipedia has a decent article. Beyond that, it's a topic covered by just about every molecular modeling textbook out there.

-Justin

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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441

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