Dear Sarah, you have to use the trjconv command with the flags -b -e and -sep. For example: trjconv -f xxx.trr -s xxx.tpr -o out.gro -b (initial frame to read in ps) -e (last frame to read in ps) -sep Regards El mar, 05-11-2013 a las 01:04 -0800, sarah k escribió: > Dear all, > > I'm going to perform a molecular dynamics simulation on a protein. As a > default the simulation gives one final *.gro file. I need to get a .gro > file after each say 500 ps of my simulation, in addition of the final file. > How can I do so? > > Best regards, > Sarah Keshavarz
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