I'm having the same issue. I have three different scripts in the same
file, one which is mapped to "/", one to "/blog" and one to "/blog/
admin/"
My app.yaml has the following handlers:

handlers:
- url: /static
  static_dir: static

- url: /favicon.ico
  static_files: static/favicon.ico
  upload: static/favicon.ico

- url: /about-me
  static_files: static/about-me.html
  upload: static/about-me.html

- url: /blog
  script: blog.py

- url: /blog/admin
  script: admin.py
  login: required

- url: /blog/admin/.*
  script: admin.py
  login: required

- url: /blog/.*
  script: blog.py

- url: /.*
  script: site.py

and site.py has:

class FrontPageHandler(webapp.RequestHandler):
        def get(self):
                self.response.out.write("""
          <html>
            <body>
              Hello
            </body>
          </html>""")

application = webapp.WSGIApplication(
        [('/', FrontPageHandler)],
        debug=True)

def main():
        util.run_wsgi_app(application)

if __name__ == "__main__":
        main()

"/" Works fine on local server, shows a blank page on appengine's
server. /blog and /blog/admin work fine. Please help, I've been going
at this for the past two hours :(

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