Considering BigQuery is an AppEngine offering, it seems like a natural fit 
to store indexes. However, Datastore uses BigTable to store indexes. Why is 
that so?

One possible explanation provided on Quora[1] is that BigQuery is not a 
right fit for heavy write scenario. If so, what is the recommended rate at 
which BigQuery can accept data?

References :

[1] 
http://www.quora.com/Google-App-Engine/Why-does-Google-App-Engine-Datastore-uses-BigTable-to-store-indexes-instead-of-using-BigQuery

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