I am using managed vms and also have the issue of non-default versions 
running residual instances.  However, I do not experience the issue you 
have described where the instances remain even after deleting the 
non-default versions.

Are you using a standard runtime or custom runtime 
(https://cloud.google.com/appengine/docs/managed-vms/#runtimes)?  The 
lifecycle (shutdown) request handling seems like a potential culprit, so 
that may be worth examining if you are using a custom runtime.  I am using 
a node custom Dockerfile and my app just returns a 200 on requests to `
/_ah/stop` 
(https://github.com/home-buddy/express-appengine-handlers/blob/master/index.js#L18).
 
 You can probably check your logs for requests to that URL to see if there 
are non-200 responses.

What version of the gcloud cli tool are you running?  While potentially 
unrelated to this issue, you may want to update it because I do not think 
`--remote` is an option anymore (implying you may need an update).

As an aside, I would love guidance on fixing the issue where every 
non-default version has instances running.  Perhaps this is the expected 
behavior since managed VMs is labeled as beta?

On Tuesday, September 15, 2015 at 7:15:10 PM UTC-4, Jeff Schnitzer wrote:
>
> I have a python app on a Managed VM which I deploy with:
>
> gcloud preview app deploy app.yaml --remote --set-default
>
> It's set to manual scaling, instances 1.
>
> It appears that every time I deploy it, the old instance stick around (and 
> get billed for). Even deleting the old versions from the appengine console 
> didn't shut down the compute engine instances. I had to figure out which 
> compute engine instance was my "live" one and delete all the others from 
> the Compute Engine part of the console.
>
> Is this supposed to work this way or is there a better workflow? I just 
> want to deploy the new version and have the old version go away... like 
> regular App Engine.
>
> Jeff
>

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