Hi,
Given discussions in the forums the bug database, I was under the
impression I could build a "Managed VM" with packages such scipy.
I am using the python-compat runtime but the deployment does not work, it
complains about scipy.
Which runtime should I use?
Do I need to build the vm myself with a Dockerfile?
Thanks for your help.
-------------------------------------------- DOCKER BUILD OUTPUT
---------------------------------------------
Step 0 : FROM gcr.io/google_appengine/python-compat-multicore
---> 2d3ca297268a
Step 1 : ADD . /app/
---> 55bdeb10465e
Removing intermediate container 2f09d79368e4
Step 2 : RUN if [ -s requirements.txt ]; then pip install -r
requirements.txt; fi
---> Running in 3aa20701d4f5
Collecting Flask==0.10.1 (from -r requirements.txt (line 1))
Downloading Flask-0.10.1.tar.gz (544kB)
Collecting Scipy==0.17.0 (from -r requirements.txt (line 2))
Downloading scipy-0.17.0.tar.gz (12.4MB)
Requirement already satisfied (use --upgrade to upgrade): Werkzeug>=0.7 in
/usr/local/lib/python2.7/dist-packages (from Flask==0.10.1->-r
requirements.txt (line 1))
Collecting Jinja2>=2.4 (from Flask==0.10.1->-r requirements.txt (line 1))
Downloading Jinja2-2.8-py2.py3-none-any.whl (263kB)
Collecting itsdangerous>=0.21 (from Flask==0.10.1->-r requirements.txt
(line 1))
Downloading itsdangerous-0.24.tar.gz (46kB)
Collecting numpy>=1.6.2 (from Scipy==0.17.0->-r requirements.txt (line 2))
Downloading numpy-1.10.4.tar.gz (4.1MB)
Collecting MarkupSafe (from Jinja2>=2.4->Flask==0.10.1->-r requirements.txt
(line 1))
Downloading MarkupSafe-0.23.tar.gz
Installing collected packages: MarkupSafe, Jinja2, itsdangerous, Flask,
numpy, Scipy
Running setup.py install for MarkupSafe: started
Running setup.py install for MarkupSafe: finished with status 'done'
Running setup.py install for itsdangerous: started
Running setup.py install for itsdangerous: finished with status 'done'
Running setup.py install for Flask: started
Running setup.py install for Flask: finished with status 'done'
Running setup.py install for numpy: started
Running setup.py install for numpy: still running...
Running setup.py install for numpy: still running...
Running setup.py install for numpy: still running...
Running setup.py install for numpy: finished with status 'done'
Running setup.py install for Scipy: started
Running setup.py install for Scipy: finished with status 'error'
Complete output from command /usr/bin/python -u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-s7Bw41/Scipy/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
install --record /tmp/pip-cpy6Ql-record/install-record.txt
--single-version-externally-managed --compile:
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries tatlas,tatlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries satlas,satlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in
/usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1552:
UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
libraries lapack not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1563:
UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
warnings.warn(LapackNotFoundError.__doc__)
lapack_src_info:
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1566:
UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
warnings.warn(LapackSrcNotFoundError.__doc__)
NOT AVAILABLE
Running from scipy source directory.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-s7Bw41/Scipy/setup.py", line 265, in <module>
setup_package()
File "/tmp/pip-build-s7Bw41/Scipy/setup.py", line 262, in
setup_package
setup(**metadata)
File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/
core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-s7Bw41/Scipy/setup.py", line 182, in
configuration
config.add_subpackage('scipy')
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
1002, in add_subpackage
caller_level = 2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
971, in get_subpackage
caller_level = caller_level + 1)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 15, in configuration
config.add_subpackage('linalg')
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
1002, in add_subpackage
caller_level = 2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
971, in get_subpackage
caller_level = caller_level + 1)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/linalg/setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources
found
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-s7Bw41/Scipy/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
install --record /tmp/pip-cpy6Ql-record/install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
/tmp/pip-build-s7Bw41/Scipy
The command [/bin/sh -c if [ -s requirements.txt ]; then pip install -r
requirements.txt; fi] returned a non-zero code: 1
The command [/bin/sh -c if [ -s requirements.txt ]; then pip install -r
requirements.txt; fi] returned a non-zero code: 1
--------------------------------------------------------------------------------------------------------------
Beginning teardown of remote build environment (this may take a few
seconds).
*ERROR:* (gcloud.preview.app.deploy) Docker build aborted: The command
[/bin/sh -c if [ -s requirements.txt ]; then pip install -r
requirements.txt; fi] returned a non-zero code: 1
Deleted
[https://www.googleapis.com/compute/v1/projects/quant-data-vision/zones/us-central1-f/instances/gae-builder-vm-20160223t101428].
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