This has been acknowledged and an issue has been filed in the tracker:
https://code.google.com/p/googleappengine/issues/detail?id=13468

On Friday, December 23, 2016 at 7:35:45 AM UTC-5, Mark Cummins wrote:
>
> @Mark: I'm a little bit confused since I don't think you can set the SDK 
>> version used by the app in production. Rather, it is always auto-upgraded 
>> to the latest.
>>
>
> Ah, no, I mean that we reverted to the old PyCrypto version, rather than 
> the SDK version.
>
> Thank you very much for the workaround.
>
> Best,
> Mak
>

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