In fact your using the right approach as you also benefit from the Firebase 
infrastructure with the added functionalities as stated on its introductory 
page <https://firebase.google.com/>.

Now, the provided tutorial by Renaud is an excellent example of assembling 
an app according to your first configuration. You may want to look at the 
Authenticating users on the server section 
<https://cloud.google.com/appengine/docs/python/authenticating-users-firebase-appengine#authenticating_users_on_the_server>
 
for more details on how your Ionic app would interact with the App Engine 
server. It is explained that once your users are signed-in via the added 
Firebase Authentication 
<https://cloud.google.com/appengine/docs/python/authenticating-users-firebase-appengine#adding_the_firebase_authentication_user_interface>
 
user interface (on your Ionic app), the communication between the app and 
the server is handled by tokens as described here 
<https://cloud.google.com/appengine/docs/python/authenticating-users-firebase-appengine#verifying_tokens_on_the_server>
.

The second approach is also possible, but you will have to implement your 
own authentication mechanism and use a similar application framework as 
Flask, which the provided tutorial application is already based on.

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