1- You can SSH on a GAE Flex instance for debugging purposes by going to 
your Console > App Engine > Instances > Select SSH on the selected instance.

2- Since the last possible solution offered is not feasible for you, can 
you detail why would you want to "createsuperuser" on the first place. If 
your intention is to create a "power user", you can create a root level 
user on your DB like this StackOverflow thread 
If you want a "grant all" permission, this will not work because Cloud SQL 
does not support "super" privileges as documented here 

3- In addition to #2, provide the versions of your Django, Cloud SQL, and 
Google Cloud SDK.

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