You almost had it, use vAxes instead of vAxis when formatting multiple axes:

vAxes: {
    0: {format: '#,###'},
    1: {format: '#%'}
}​ 

On Tuesday, August 7, 2012 4:58:16 PM UTC-4, David Boggus wrote:
>
> I posted this question on 
> Stackoverflow<http://stackoverflow.com/questions/11852711/google-visualization-api-format-secondary-y-axis-different-from-primary-y-axis>already
>  but have not received any responses yet so I figured this might be 
> a better place to post it.
>
>
>    I have some data that I am trying to display using the Google 
> Visualization API. I have been able to create the graph and it looks great 
> except that the Secondary Y-Axis should be displayed as percentages instead 
> of regular numbers. Here is my code and an image of what is produced.
>
> google.load('visualization', '1', {packages: ['corechart']});
>
> function drawVisualization() {
>     //Some raw data (not necessarily accurate)'
>     var data = google.visualization.arrayToDataTable([
>         ['AuditPeriod', 'Audit Count', 'Fail Percentage'],
>         ['02-11-2012',  0,      0],
>         ['02-18-2012',  0,      0],
>         ['02-25-2012',  0,      0],
>         ...
>         ['07-21-2012',  1476,   .233062],
>         ['07-28-2012',  1651,   .253180],
>         ['08-04-2012',  2217,   .210645]
>     ]);
>
>     var options = {
>         vAxis: [0: {format: '#,###'}, 1: {format: '#%'}],
>         hAxis: { title: "Week", format: 'm/d/y'},
>         series: {
>             0:{ type: "bars", targetAxisIndex: 0 },
>             1: { type: "line", targetAxisIndex: 1}
>         }
>     }
>
>     var chart = new 
> google.visualization.ComboChart(document.getElementById('chart_div'));
>     chart.draw(data, options);
> }        
> google.setOnLoadCallback(drawVisualization);
>
> [image: enter image description here]
>
> If I set vAxis:{format: '#%'} then both axes are formated as Percentages 
> which I don't want. Is there a way to format the second axis different form 
> the first?
>
>

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