Hi everybody,

as we successfully participated in a big biological student
competition called iGEM at the famous MIT last week by creating a
software project based on Wave, we want to take the opportunity to
both thank the Wave-developers for creating Wave and making our
project possible (THANK YOU!) and to give you a short presentation of
what we did, as some of the things we created might be interesting for
other projects as well.

Our Idea basically was to create robots adding molecular biological
functionality to Wave, and therefore allow biologist to plan their
experiments collaboratively online.
As there are LOTS of such functions biologist want to have, we planed
our project to be easy to extend. Therefore we created a main robot
([email protected]) and an extended abstract robot class other
developers can use to create their own (synbiowave)robots, which
extend the functionality offered in a wave when added to it.
To allow users to call all that functions easily easily, we
additionally created a toolbar-gadget, to which robots register their
functions when added to the Wave (that is some of the stuff down by
the main robot and the extended abstract class). If you want to test
how it works add [email protected] to the wave (after you
added the main robot). The Toolbar should display a new Documentation-
dropdown after that.

Let me know if some of you like to use that dynamical toolbar in your
own projects (i think i read some post requesting such a thing here
before), we can separately release it after some cleanup (of cause you
are free to extract it from our svn at sourceforge yourself as all is
open source...).

Additionally we created a file upload to and download from robots
(what took us quite a while, think that could be interesting for
others as well) and of course lots of biological stuff.

At the moment all robots are written in java, we a planning to create
a extended python abstract robot class later...

If you like to read more (we did a lot of documentation for the
competition) please visit
SynBioWave.org or http://sourceforge.net/projects/synbiowave


Thanks for reading all thought this.
We are always looking for feedback, feel free to answer :-)

David, Jörg and Paul
University of Freiburg, Germany

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