Thanks for the help Juan. Just for info, I did try all these cleanup operations before hitting the forum, and they all failed. I want to use m2eclipse because this is a complex multi-component project and it makes dealing with it much easier. Also, it had been working prior to my update to GPE 2.2.1.v201103311225. The wrong behavior is obvious: "Run As > Web Application" deletes a jar it's not supposed to delete. I don't think any amount of clean-up and refreshing will solve that.
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