I tried creating a custom run configuration, just for the compiler and tried 
with both 'GWTCompiler' and 'Compiler' as the main class, but still i'm 
getting the same warning.

And this happened when the application is compiled by GPE for deploying to 
appengine:

## Compiler output 

   Compiling 6 permutations
      Compiling permutation 0...
      Compiling permutation 1...
      Compiling permutation 2...
      Compiling permutation 3...
      Compiling permutation 4...
      Compiling permutation 5...
   Compile of permutations succeeded
Linking into F:\repo\databox\trunk\target\databox-1.0\DataBox
   [WARN] DevMode warning: Clobbering appcache.nocache.manifest to allow 
debugging. Recompile before deploying your app!
   Generating offline cache manifest safari.appcache.nocache.manifest
   [WARN] DevMode warning: Clobbering appcache.nocache.manifest to allow 
debugging. Recompile before deploying your app!
   Generating offline cache manifest gecko1_8.appcache.nocache.manifest
   [WARN] DevMode warning: Clobbering appcache.nocache.manifest to allow 
debugging. Recompile before deploying your app!
   Generating offline cache manifest opera.appcache.nocache.manifest
   [WARN] DevMode warning: Clobbering appcache.nocache.manifest to allow 
debugging. Recompile before deploying your app!
   Generating offline cache manifest ie6.appcache.nocache.manifest
   [WARN] DevMode warning: Clobbering appcache.nocache.manifest to allow 
debugging. Recompile before deploying your app!
   Generating offline cache manifest ie8.appcache.nocache.manifest
   [WARN] DevMode warning: Clobbering appcache.nocache.manifest to allow 
debugging. Recompile before deploying your app!
   Generating offline cache manifest ie9.appcache.nocache.manifest
   Invoking Linker AppCacheLinker
      Generating offline cache manifest appcache.nocache.manifest
   Link succeeded
   Compilation succeeded -- 184.699s
##

Actual code of SimpleAppCacheLinker:
http://pastebin.com/XtLh4qKn

Thanks,, 

Thanks,, 

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