I honestly don't understand why you don't want to use *.gwt.xml files but 
well, you can create a module programmatically using 
ModuleDefLoader.createSyntheticModule (this is used in JUnitShell to create 
a module that inherits both your module –the one whose name you return from 
your GWTTestCase#getModuleName()– and com.google.gwt.junit.JUnit).
As for calling the DevMode and/or Compiler (and again, I don't understand 
why you don't want to simply call them from the command-line, and use 
-noserver for the DevMode and use your own Jetty server), *do* look into 
their main(): you have to create a CompilerOptions instance (or similar for 
DevMode) that you pass as constructor argument to a Compiler instance, and 
then call its run() method; and similarly for the DevMode.
Currently, the Compiler's main() uses a CompileTask and CompileTaskRunner, 
but they don't seem to bring much value; you'd better use them though to be 
future-proof.

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