Are we there yet? i.e. is this done? I'd like at least one other site to review and test this out in whatever way you think is appropriate to be confident that you'll be able to interoperate with other sites via this ontology. Ideally we'll gather a few test cases of some form that all sites can try out.
Perhaps build some queries in babel and then download them (via the i2b2 message debug window) and then add mapping metadata as necessary to be able to run them at your site. And/or stage UMLS and run the SQL script to reproduce my results. To aid in nominations, I spent some time getting trac to index current work by site<http://informatics.gpcnetwork.org/trac/Project/report/10> (also linked from DevTeams<http://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>). Based on that, I'm nominating George and the MCW team (by assigning #63<http://informatics.gpcnetwork.org/trac/Project/ticket/63> to him). If you accept, go ahead and accept the ticket. Otherwise, please assign it to another team. Or if you're at a loss to pick another team, assign it back to me. -- Dan ________________________________ From: Dan Connolly Sent: Tuesday, March 04, 2014 12:37 PM To: [email protected] Subject: RE: details for ALS 355.20 and other ICD9CM diagnoses I created a folder in PCORNet central desktop and put the ICD9CM stuff in it: * GPC i2b2 metadata<https://pcornet.centraldesktop.com/c4gpc/folder/3742195/> * icd9cm.csv<https://pcornet.centraldesktop.com/c4gpc/file/30670552/> 5.8 MB See #76<http://informatics.gpcnetwork.org/trac/Project/ticket/76> about sharing the rest of the stuff from babel. ________________________________ From: Dan Connolly Sent: Monday, March 03, 2014 7:24 PM To: [email protected] Subject: details for ALS 355.20 and other ICD9CM diagnoses ... I wonder what should be the deliverables for (this part of) our shared terminology? * availability for exploratory use in the babel i2b2 web client * a CSV file of i2b2 metadata * SQL source code to create the i2b2 metadata from the results of running the UMLS Oracle SQL load scripts The first is done, provided the details above are acceptable to everybody. The CSV file is on babel; I'd have to check on the licensing details for ICD9 to know whether I can post it publicly. ... -- Dan
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