The ER/PR is a Site Specific Factor in the NAACCR file. Site Specific Factors vary by cancer site so SSF1 for Breast Cancer has a different meaning than SSF1 for Colon Cancer. To query for ER in i2b2, you can drag over ³SEER Site->Breast² and ³2880 CS Site-Specific Factor 1² and specify that they occur in the same financial encounter and you should get ER values. If you use "Site-Specific Factor 2², you will get the PR value.
Other than using the above logic to create brand new concepts for ER/PR including new facts in the observation fact table and a new terminology for the new concepts, I¹m not sure if there is going to be a good way to make it available to the end user. I¹m open to suggestions though as I¹m pretty sure our end users would like it if we could magically split out all of the Site Specific Factors. See http://seer.cancer.gov/csreqstatus/application.html?report=requiredFactors&; setter=seer&version=0204&schema=0&years=0 Phillip On 4/30/14, 4:28 PM, "GPC Informatics" <[email protected]> wrote: >#118: ER/PR status in NAACCR tumor registry ETL >--------------------------+--------------------- > Reporter: rwaitman | Owner: preeder > Type: enhancement | Status: new > Priority: major | Milestone: > Component: data-stds | Keywords: >Blocked By: | Blocking: >--------------------------+--------------------- > In ticket:32#comment:8, Betsy noted Hormone receptor status (ER/PR) as an > important data element for breast cancer cohort characterization. > > Dan got the impression that Phillip knows where this occurs in the NAACCR > file and has improved on the KUMC scripts in this area (perhaps just >nicer > metadata labels?). Let's see if we can get this enhancement available to > the KUMC HERON user community (and perhaps, eventually, on babel). > > ''Dan, reporting for Russ based on 29 Apr planning meeting.'' > >-- >Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/118> >gpc-informatics <http://informatics.gpcnetwork.org/> >Greater Plains Network - Informatics ________________________________ UT Southwestern Medical Center The future of medicine, today. _______________________________________________ Gpc-dev mailing list [email protected] http://listserv.kumc.edu/mailman/listinfo/gpc-dev
