These are the paths for the 27 variables specifically pulled for my report.
Tamara, can you get those that are not included in my report or Betsy decided
to use different variables?
[1] \\i2b2\\Abridged\\0440 Grade\\
[2] \\i2b2\\Abridged\\0490 Diagnostic Confirmation\\
[3] \\i2b2\\Abridged\\0521 Morph--Type&Behav ICD-O-3\\
[4] \\i2b2\\Abridged\\0610 Class of Case\\Non-Analytic\\
[5] \\i2b2\\Abridged\\1750 Date of Last Contact\\
[6] \\i2b2\\Abridged\\1760 Vital Status\\
[7] \\i2b2\\Abridged\\1860 Recurrence Date--1st\\
[8] \\i2b2\\Abridged\\Demographics\\0190 Spanish/Hispanic Origin\\
[9] \\i2b2\\Abridged\\Staging\\3430 Derived AJCC-7 Stage Grp\\
[10] \\i2b2\\Demographics\\Race\\
[11] \\i2b2\\Demographics\\Vital Status\\Deceased per SSA\\
[12] \\i2b2\\Demographics\\Vital Status\\Deceased\\
[13] \\i2b2\\naaccr\\S:1 Cancer Identification\\0380 Sequence Number--Central\\
[14] \\i2b2\\naaccr\\S:1 Cancer Identification\\0410 Laterality\\
[15] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\0820 Regional Nodes
Positive\\
[16] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\0830 Regional Nodes
Examined\\
[17] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\2869 CS Site-Specific
Factor15\\
[18] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\2876 CS Site-Specific
Factor22\\
[19] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\2877 CS Site-Specific
Factor23\\
[20] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\2880 CS Site-Specific
Factor 1\\
[21] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\2890 CS Site-Specific
Factor 2\\
[22] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\2940 Derived AJCC-6 T\\
[23] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\3020 Derived SS2000\\
[24] \\i2b2\\naaccr\\S:11 Stage/Prognostic Factors\\3400 Derived AJCC-7 T\\
[25] \\i2b2\\naaccr\\S:4 Follow-up/Recurrence/Death\\1770 Cancer Status\\
[26] \\i2b2\\naaccr\\S:4 Follow-up/Recurrence/Death\\1861 Recurrence Date--1st
Flag\\
[27] \\i2b2\\naaccr\\SEER Site\\Breast\\
-----Original Message-----
From: Chrischilles, Elizabeth A [mailto:[email protected]]
Sent: Thursday, December 18, 2014 12:45 PM
To: Dan Connolly; Jianghua He; '[email protected]'; Tamara McMahon
Subject: RE: [gpc-informatics] #204: i2b2 query for underlying breast cancer
study population
Wendy or Tamara, will you please replace the list with a new one that includes
path names so we can all review again to be sure we are all clear? Thanks --
Betsy
-----Original Message-----
From: Dan Connolly [mailto:[email protected]]
Sent: Thursday, December 18, 2014 12:43 PM
To: Jianghua He; '[email protected]'; Tamara McMahon; Chrischilles,
Elizabeth A
Subject: RE: [gpc-informatics] #204: i2b2 query for underlying breast cancer
study population
Yes, we should share paths. I'm pretty sure Tamara plans to share the actual
query via the babel i2b2 site, and in doing so, all the paths will be specified.
--
Dan
________________________________________
From: Jianghua He
Sent: Thursday, December 18, 2014 12:40 PM
To: '[email protected]'; Dan Connolly; Tamara McMahon;
[email protected]
Subject: RE: [gpc-informatics] #204: i2b2 query for underlying breast cancer
study population
Those are the exact variable names in i2b2. Shall we provide paths for those
without NAACCR item numbers?
-----Original Message-----
From: GPC Informatics [mailto:[email protected]]
Sent: Thursday, December 18, 2014 12:02 PM
To: Dan Connolly; Tamara McMahon; Jianghua He; [email protected]
Subject: Re: [gpc-informatics] #204: i2b2 query for underlying breast cancer
study population
#204: i2b2 query for underlying breast cancer study population
----------------------------------+-----------------------------------
Reporter: dconnolly | Owner: tmcmahon
Type: design-issue | Status: new
Priority: major | Milestone: bc-survey-cohort-def
Component: data-sharing | Resolution:
Keywords: breast-cancer-cohort | Blocked By: 167
Blocking: 205 |
----------------------------------+-----------------------------------
Comment (by bchrischilles):
I think the Wendy's list may have some abbreviated variable names. Can we
use the exact names? I think they all or most of them include the NAACCR item
number. For example:
410 Laterality
SEER Summary Site (rather than "Breast")
Perhaps Wendy can update the list with the exact name of the variable
Replying to [comment:6 jhe]:
> Tamara,
>
> This list includes all variables used in my resport. Some comments:
Do we need to be more specific, saying Race 1-Race 5 in registry? There is no
information underneath ethnicity (SEER registry) at our site, would it be the
same for other sites? Lateratlity appears twice in the list.
>
>
> Thanks,
>
> Wendy
>
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/204#comment:8>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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