https://docs.google.com/document/d/14ZoC6ZcgVpqUHodYEkCTrv8caYliPLoEWe8cwxQDKFY/edit#
MARCH 24, 2015 GPC Dev meeting notes
1. Convene, take roll, review records and plan next meeting.
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* meeting notes
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>): previous
notes OK? today's scribe: Hubert / UNMC.
* roll: all 10
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? comments on the agenda?
* KUMC*, CMH*, UIOWA*, WISC*, MCW (regrets), MCRF*, UMN*, UNMC*,
UTHSCSA*, UTSW, (MU) *(IU)
* #257 (pg_dump in /usr/bin/ (default path) is outdated)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/257#comment:2>
* #258 (Summary of breast cancer treatment)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/258>
* Next meeting: 31 Mar. Scribe volunteer?
UTHSCSA
2. PopMedNet, CDM status; Site Visit debrief
* #160 (reproducible GPC, CDM refresh at a critical mass of GPC sites
(PMO ...) closed
<https://informatics.gpcnetwork.org/trac/Project/ticket/160#comment:17>Phase II
in progress - layered metadata discussion
Update per site
CMH - have built test instance of CDM tables rolling out into PROD in the next
couple of months. Built using CMH code. Currently hooking up PopMedNet to CDM
IOWA- CDM tables in place by end of week. FYI - Marshfield adapted shared code
to SQL Server. https://bitbucket.org/erlarose/mssql_gpc_pcori_cdm
WISC - contractor aboard to do this - ETA a couple of weeks presuming SQL
Server has enough space.
MCW - will use own code to build CDM tables.
MCRF - Waiting on external collaborator agreement to be signed before declaring
“we are fully connected”. SQL that is posted … from Jessica, DSSNI liaison to
GPC
UMN - Built with site technology.
UNMC - built with site technology and have ran queries.
UTHSCSA - done.
UTSW - In process of building updated version of CDM tables.
Data characterization -- ETA April. Much will be based upon the ENROLLMENT
table. Will await more information.
* #240<https://informatics.gpcnetwork.org/trac/Project/ticket/240> Data
Characterization re CDM v1
* DRN status at GPC sites
<https://docs.google.com/spreadsheets/d/1Lg5fAHV5_rBT_FyF4_8NDuZC7KlNapLai90LEkdnxpI/edit#gid=0>
* comments on the site visit; ref PCORI presentation slides
<https://informatics.gpcnetwork.org/trac/Project/attachment/wiki/WikiStart/PCORnet%20GPC%20Site%20Visit%20Slidesv4.pptx>Data
Linkage - ticket #133. See ticket for details.
3.
Milestone:
data-quality3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality3>
* standardization measurement framework: GPC Terminology Alignment
Progress
<https://docs.google.com/spreadsheets/d/1ywbW9rusve8sptB9RVESnpGwRUnwSJ9q_tBakhE8INo/edit#gid=0>In
2015-2016 requires to align terms for meaningful use to national standards.
Example show on meds. Discussion of both volume and ontological coverage of
data. We shall add this to quarterly data checks.
Add to next quarter - need some volunteers from sites - Marshfield raises hand
to volunteer. (Laurel). Epic site? Perhaps a standard Heron-code centric
site -- Angela at UTHSCSA. ETA for our Q2 2015 quality check code.
* How/when do we start work at sites?
Q1 exercise : Waiting on code…. Noting some prefixing inconsistencies on
babel. Phil Reeder suggesting prefixing them all to be GPC based prefix.
Looking an example naaccr data. Discussion about medication differences.
Expectation of issues as site as we do this. Author’s choice of picking
standard and see how the results come out.
Code being written will write out file for importing into RedCap.
ETA by end of the week.
4.
milestone:data-domains2<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains2>
* #243<https://informatics.gpcnetwork.org/trac/Project/ticket/243>
procedures
Code should be readable - Nate demoing/looking.
Looking at procedure codes.
Discussion….. CPT4 vs. ICD9 vs HCPCS.
Angela has offered code.
* #90<https://informatics.gpcnetwork.org/trac/Project/ticket/90>
diagnosis modifiers
* GPC Vitals #23
<https://informatics.gpcnetwork.org/trac/Project/ticket/23>Couple of more weeks
for SA - MCRF OK with design- will upload to Babel. Closing the ticket.
5. Milestone:
survey-redcap-als<https://informatics.gpcnetwork.org/trac/Project/milestone/survey-redcap-als>
* #208 (ALS survey
plan)<https://informatics.gpcnetwork.org/trac/Project/ticket/208#comment:6>,
data dictionary, import spreadsheet
Query of RedCap forms/etc. to manage the project. See the ticket (comment 5 of
ticket).
6.
Milestone:
obesity-survey-def<https://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def>
, Milestone:
cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>
* any news?
7.
Milestone:
adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual>
* #256 (Investigate capturing e-consent via e-signature)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/256>
Hubert Hickman
Systems Sr. Analyst
[email protected]
(402) 559-4838
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