Please excuse the delay. Somehow it takes me all day to put these agendas together. Proposed agenda below; also available in
* 7 July 2015 GPC Dev Meeting Notes<https://docs.google.com/document/d/1Ym3fIc3U_P6c8vctGRQj584K_ZieHEZ0H6b3uQ1voX8/edit> ________________________________ 1. Convene, take roll, review records and plan next meeting * Meeting ID and access code: 817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 (571) 317-3131 * roll: all 10(12) DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, (MU), (IU) Reminder - put institution after your name in GoToMeeting preferences * today's scribe: Justin @ UMN. comments on the agenda? on last week’s notes (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)? recent tickets opened/closed FYI (note also recent ticket comments report<https://informatics.gpcnetwork.org/trac/Project/report/13>): * #265 (QA ER/PR status and other Breast Cancer data elements) reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/265#comment:12> * #268 (HERON ETL clarity 2014 impact on 2012 installations) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/268#comment:6> * #296 (breast cancer treatment from EMR) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/296#comment:4> * #300 (GPC REDCap project requests go nowhere) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/300#comment:1> * #301 (obesity cohort characterization) created<https://informatics.gpcnetwork.org/trac/Project/ticket/301> * #302 (breast cancer correspondence between EHR and tumor registry variables - study KUMC population created <https://informatics.gpcnetwork.org/trac/Project/ticket/302> * #303 (breast cancer survey dataset format, test data) created<https://informatics.gpcnetwork.org/trac/Project/ticket/303> * #304 (accuracy of ALS diagnosis data collection) created<https://informatics.gpcnetwork.org/trac/Project/ticket/304> * Next Meeting: July 7 scribe: MN - Justin Dale 2. Action Needed - PCORI Phase 2 Survey<http://listserv.kumc.edu/pipermail/gpc-dev/2015q3/001820.html> Brittany Zschoche 3. Review of current work by owner site<https://informatics.gpcnetwork.org/trac/Project/report/11> 4. milestone:data-quality-q2 * #291 Gather 2015 2nd quarterly QA numbers<https://informatics.gpcnetwork.org/trac/Project/ticket/291> - “First draft of QA code covering ... should be available on Bit Bucket at the end of this week.” -- Mish Jun 8<https://informatics.gpcnetwork.org/trac/Project/ticket/291#comment:5> Done: 4d7def8<https://bitbucket.org/jvanschyndle/gpc-2015-q2-qa-files/commits/4d7def85af3604448c0aac7dff5bbdeecfcc1948>. ETA for running at all sites? 1-3 leading sites? * #293 Report SAS and RDBMS version and packages to DSSNI<https://informatics.gpcnetwork.org/trac/Project/ticket/293> * Missing MCW, Iowa * Laurel to send info to DSSNI/Jessica today (30 June). * #240<https://informatics.gpcnetwork.org/trac/Project/ticket/240> DSSNI Liaison call is July 10 5. milestone:obesity-survey-def<https://informatics.gpcnetwork.org/trac/Project/milestone/obesity-survey-def> * #249 (establish GPC Weight and Health survey protocol) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/249#comment:7> - eff. May 18 * #220 Iowa - Prakash will work with MCRF to get set up with Databuilder and MS SQL server * #250 - Alex: to put obesity query on babel * #253<https://informatics.gpcnetwork.org/trac/Project/ticket/253> obesity survey REDCap tracker and tools<https://informatics.gpcnetwork.org/trac/Project/ticket/253> * Alex: to create a validation script to make sure the file/format of the manually created file (#205) works * Alex: to double-check with Dan Hale to make sure it’s ok to reduce the SQLite file size is to limit dates (done: Lead PI of obesity study agrees with using date range to limit cohort<http://listserv.kumc.edu/pipermail/gpc-dev/2015q3/001819.html>) * Hubert/UNMC to try out Angela’s Tracker - in progress 6. milestone:data-sec-check * #80<https://informatics.gpcnetwork.org/trac/Project/ticket/80> assessment of GPC vs. data privacy and security standards<https://informatics.gpcnetwork.org/trac/Project/ticket/80>: Write-up for milestones 3.09, 3.10, 3.11, and 3.12 looks straightforward. Patrick to have Umberto Tachinardi contact Dan about writing up the milestones (#80). 7. milestone:adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual> * #299 (cross-site patient overlap test using SSDMF data)<https://informatics.gpcnetwork.org/trac/Project/ticket/299> George / MCW ready to try it out? 8. Milestone: bariatric-study-data * #305<https://informatics.gpcnetwork.org/trac/Project/ticket/305> babel missing temporal option on or before<https://informatics.gpcnetwork.org/trac/Project/ticket/305> 9. milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3> * #191<https://informatics.gpcnetwork.org/trac/Project/ticket/191> and SCILHS i2b2 PCORnet Common Data Model Ontology Home<https://community.i2b2.org/wiki/display/SCILHS/SCILHS+i2b2+PCORnet+Common+Data+Model+Ontology+Home> - slow progress * #199<https://informatics.gpcnetwork.org/trac/Project/ticket/199> representing Medication workflows: modifiers<https://informatics.gpcnetwork.org/trac/Project/ticket/199>: Hickman/UNMC to share ETL code via Epic’s site. (done) PR: OK, I’ll take a look when you post the surescripts extract, Jim 10. Milestone: cohort-char-bc-db: FYI: “RW: let's do the next BC data pull from all sites (#297<https://informatics.gpcnetwork.org/trac/Project/ticket/297>) in August so we can include the results (#298<https://informatics.gpcnetwork.org/trac/Project/ticket/298>) in our phase 1 cohort characterization.” ________________________________ -- Dan
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