What else for tomorrow? Scribe volunteers are welcome.
* 9 Feb 2016 GPC-Dev meeting
notes<https://docs.google.com/document/d/14nmubyuOwTk_j0Mlt3JEL38rb45Ch1w7dauZ0qAuEig/edit#>
Current proposal:
________________________________
1. Convene, take roll, review records and plan next meeting
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU,
IU (regrets)
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: IU ??
* reminders from current work by owner
site<https://informatics.gpcnetwork.org/trac/Project/report/11>:
* comments on the agenda? on last week’s notes
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)? recent
tickets opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline>
FYI (note also recent ticket comments
report<https://informatics.gpcnetwork.org/trac/Project/report/13>):
* #451 (X02 Application - NIH CTSA for Collaborative Innovation
(Barohn PI))
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/451#comment:2>
* #472 (Assess quality and quantity of Wisconsin Medicaid data)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/472> - owner:
btaylor
#93 (federated login for GPC services such as babel)
reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/93#comment:21>
* #398 (next-d post-award processes)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/398#comment:3>
* #399 (WISC ALS survey on regulatory stand-by)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/399#comment:3>
* Next Meeting: 16 Feb Scribe: LRU nominates IU, MU, UNMC, UTSW,
etc.<https://informatics.gpcnetwork.org/trac/Project/ticket/12>
2.
milestone:data-quality-q3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-quality-q3>
- Feb 15
*
depgraph<https://informatics.gpcnetwork.org/trac/Project/depgraph/milestone/data-quality-q3>
* alternative: PCORnet CDM
* alternative: OHDSI tools
3.
milestone:gpc-phase2-h1<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc-phase2-h1>
Feb 22
* CDM v3 - DRN OC
timeline<https://pcornet.imeetcentral.com/drnoc-workgroups/file/43823210/>
* #473 PCORnet CDMv3 SAS Readiness - poll by site (see
below<https://docs.google.com/document/d/14nmubyuOwTk_j0Mlt3JEL38rb45Ch1w7dauZ0qAuEig/edit#heading=h.cqjoizou8i1l>)
* #117 (SAS miniSentinel environment for the PCORNet DRN queries)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/117#comment:14>
as dup
* #465 (date obfuscation (shifting) for PCORnet CDM queries) closed
<https://informatics.gpcnetwork.org/trac/Project/ticket/465#comment:2>Somebody
asked about this at the hackathon. Here’s your answer: “Per Russ in GPC PMO,
closing until we see national governance around data.
Per GPC
DSA<https://informatics.gpcnetwork.org/trac/Project/wiki/GovernanceMaterials#DSA>
have allowances to run queries around de-identified dates.”
4. next QA milestone
* reproducible CDM refresh
#160<https://informatics.gpcnetwork.org/trac/Project/ticket/160>
* SHRINE / SNOW -
#459<https://informatics.gpcnetwork.org/trac/Project/ticket/459> docs
5.
milestone:adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual>
Feb 29
* FW: PCORnet ADAPTABLE data strategy
discussion<http://listserv.kumc.edu/pipermail/gpc-dev/2016q1/002424.html>
Shelley Rusincovitch
* slides, code, discussion
thread<https://informatics.gpcnetwork.org/trac/Project/ticket/263#comment:29>
* Did anyone attend? If so, debrief.
6.
milestone:cohort-char1<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char1>
March 15
* #458<https://informatics.gpcnetwork.org/trac/Project/ticket/458>
sqlite validation tool for Weight and Health
survey<https://informatics.gpcnetwork.org/trac/Project/ticket/458> - done.
#379<https://informatics.gpcnetwork.org/trac/Project/ticket/379> Link EHR data
to Health and Medical Research Family Survey (HMRFS) 2 results
<https://informatics.gpcnetwork.org/trac/Project/ticket/379>poll by phase 1
site for validation results, file upload
status<https://redcap.gpcnetwork.org/redcap_v6.2.2/DataExport/index.php?pid=29&report_id=51>,
data builder status
* KUMC - n/a done
* CMH
* UIOWA
* #220<https://informatics.gpcnetwork.org/trac/Project/ticket/220>
data builder
* WISC
* #219<https://informatics.gpcnetwork.org/trac/Project/ticket/219>
data builder status
* MCW
* #474 (DataBuilder at
MCW)<https://informatics.gpcnetwork.org/trac/Project/ticket/474>
* MCRF - n/a done
* UMN
* UNMC
* UTHSCSA - n/a done
* UTSW
7.
milestone:gpc2sites<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc2sites>
March 1 (to March 30)
* #239 (WISC cancer tumor registry terms and counts not available on GPC
term ...) closed by
kwanta<https://informatics.gpcnetwork.org/trac/Project/ticket/239#comment:32> -
excellent news.
* #443 IU Tumor Registry: demo in March timeline OK?
8.
milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3>
* #447<https://informatics.gpcnetwork.org/trac/Project/ticket/447>
i2b2->redcap: rec_type -> type: did it work?
9.
milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data>
* There is an in-person kick-off meeting in DC February 25-26.
(ticket:283#comment:11<https://informatics.gpcnetwork.org/trac/Project/ticket/283#comment:11>).
10.
milestone:tapir-trial-1<https://informatics.gpcnetwork.org/trac/Project/milestone/tapir-trial-1>
* #383: “delivery date for the feasibility query may be two months from
now”
11. CDRN Demographic Table - the ask was not just for a Dec 16 meeting
* #408 (collect Enrollment numbers for 2016 H1 interim report (milestone
2.3.5))
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/408#comment:2>
* #439 (Demographics breakdown for population for PCORI Reporting)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/439#comment:12>
12.
milestone:emr-align-mu2<https://informatics.gpcnetwork.org/trac/Project/milestone/emr-align-mu2>
* #391 (Utilization of Epic internal mapping tables to link medications
to RxNorm)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/391#comment:3> -
fixed in 03ff48c0b6ec
#473 PCORnet CDMv3 SAS Readiness
Site
SAS CDM v3 Readiness Date/DQ Status
Children's Mercy
TBD
Indiana U Regenstrief
3/1/16
Marshfield Clinic
Completed DQ
Med Coll Wisconsin
3/31/16
U of Minnesota AHC
3/31/16
U of Missouri HC
6/30/16
U of Nebraska
3/15/16
University of Iowa
TBD
University of Kansas
DQ sent 2/2/16
UT San Antonio
DQ sent 2/2/16
UT SW Med Ctr
DQ sent 2/2/16
UW Madison
3/14/16
________________________________
--
Dan
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