Your part of the current plan is: * get your CDM diagnoses and procedures tables in shape as part of CDM readiness #473<https://informatics.gpcnetwork.org/trac/Project/ticket/473> * URGENT * these are the long-skinny tables relevant to #448; there may be many rows per patient * update your tumor registry ETL to pick up enhancements for summary of treatment, site-specific factors, etc. (#358<https://informatics.gpcnetwork.org/trac/Project/ticket/358>) * not urgent yet, but will be soon; you're more than welcome to join the few sites that have already done it if your CDM is done... though the site-specific factor part hasn't been released yet (I just pushed 34befe8 if you're really curious). * run an updated query and submit a databuilder file plus relevant parts of the CDM diagnoses and procedures tables (#297<https://informatics.gpcnetwork.org/trac/Project/ticket/297>) * we're not there yet, and there may be some technical details to work out around joining the i2b2 results with the CDM tables; that's what #448 is about. You're free to explore the design space, but only if you find yourself with free time after you're done with CDM v3 data characterization.
-- Dan ________________________________ From: [email protected] [[email protected]] on behalf of Pedersen, Jay G [[email protected]] Sent: Thursday, March 24, 2016 2:16 PM To: [email protected] Subject: UNMC -- question about ticket #448 all diagnoses and procedures for breast cancer cohort Hi, This is Jay Pedersen from UNMC. My understanding is that UNMC may have some work related to ticket #448 ( all diagnoses and procedures for breast cancer cohort) , and that this was likely assigned before the current development team at UNMC were on the project. I am not feeling like I get enough information from ticket #448 itself to know what we should be doing about it. Can the work ticket ... as it relates to UNMC ... and what the GPC would like have UNMC related to it ... be clarified? I understand "long skinny tables", but it is unclear to me what long skinny table I might need to build or who might access it or how. Perhaps this is just a request for additional information in BABEL related to breast cancer? Whatever it is, I need to know. Jay Pedersen, M.A. Department of Pathology/Microbiology University of Nebraska Medical Center 985900 Nebraska Medical Center Omaha NE 68198-5900 402-559-9487<tel:402-559-9593> (office) 402-739-3496<tel:402-350-7851> (mobile) The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender.
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