What else for tomorrow?
* GPC Dev Meeting Notes 7 June
2016<https://docs.google.com/document/d/17TM5-gJqZaSVRKL4O1GXWXGv4IFpukB7LHY1XbgvZdk/edit>
scribe: IU
________________________________
1. Convene, take roll, review records and plan next meeting
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC (regrets: Wanta), MCW, MCRF, UMN, UNMC,
UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: IU
* reminders from current work by owner
site<https://informatics.gpcnetwork.org/trac/Project/report/11>:
* MU: #509 (geocoding ETL code: establish shared version control
repository)<https://informatics.gpcnetwork.org/trac/Project/ticket/509>
* comments on the agenda? on last week’s notes
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)?
* recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> FYI
(note also recent ticket comments
report<https://informatics.gpcnetwork.org/trac/Project/report/13>):
No FYI tickets this week; all recently opened/closed tickets are scheduled for
discussion below.
* Next Meeting: 14 June; scribe?
* Note LRU
schedule<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>,
which nominates UMN, UTHSCSA …
2.
Milestone:antibiotic-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/antibiotic-study-data>,
milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data>
- due 6 Jun
* #492<https://informatics.gpcnetwork.org/trac/Project/ticket/492> How
to Build SAS CDM v3 Medication
Tables<https://informatics.gpcnetwork.org/trac/Project/ticket/492> - review ABX
functional
spec<http://listserv.kumc.edu/pipermail/gpc-dev/attachments/20160517/4d78d5cb/attachment-0004.docx>;
Keith@WISC, JRC@UNMC, LV@MCRV
* JRC: “I have pulled the RXNORM code list for antibiotics that can
be given orally or parenterally which runs about 12000 items and appears longer
that the code list included in the functional spec.”
* #103<https://informatics.gpcnetwork.org/trac/Project/ticket/103>
subject of observation (e.g. maternal findings relevant to
child)<https://informatics.gpcnetwork.org/trac/Project/ticket/103> closed
JRC: “My review of pediatric obesity/antibiotic protocol does not identify any
maternal variables that are to be included.”
* #510<https://informatics.gpcnetwork.org/trac/Project/ticket/510>
Bariatric Query Specification and
Timeline<https://informatics.gpcnetwork.org/trac/Project/ticket/510> - what is
the task?
Bariatric technical specs, functional specs: next steps?
<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002875.html>Obesity Studies
Query Process and
Timeline<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002877.html>
* Fwd: [PCORnet CDRN PIs] CDRN PI and PM Weekly Update on Obesity
Study requirements
<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002922.html> Russ Waitman
* Any stuff we don’t already have tickets/milestones for?
* What’s a useful due date to track? (after May 31 IRB target)
3.
Milestone:adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual>
due 13 Jun
* #273<https://informatics.gpcnetwork.org/trac/Project/ticket/273>
ADAPTABLE study ID linkage, REDCap
integration<https://informatics.gpcnetwork.org/trac/Project/ticket/273> -
closed fixed, right?
* #462 (validate ADAPTABLE computable phenotype with chart review)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/462#comment:22>
fixed, right?
* #353<https://informatics.gpcnetwork.org/trac/Project/ticket/353>
accrue first patient to ADAPTABLE
study<https://informatics.gpcnetwork.org/trac/Project/ticket/353> - are we
there yet?
4.
Milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3>
new DCQ: response due 6/24.
#473<https://informatics.gpcnetwork.org/trac/Project/ticket/473> PCORnet CDMv3
SAS prep-to-research
Readiness<https://informatics.gpcnetwork.org/trac/Project/ticket/473>
* CDM v3 Appendix B fixes - pencils
down?<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002923.html> Wanta
Keith M
* CDM encounter types and CDM
refresh<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002915.html> Justin
Dale
5.
Milestone:bc-dx-px<https://informatics.gpcnetwork.org/trac/Project/milestone/bc-dx-px>
due Jun 14
* #448<https://informatics.gpcnetwork.org/trac/Project/ticket/448> all
diagnoses and procedures for breast cancer
cohort<https://informatics.gpcnetwork.org/trac/Project/ticket/448>
* Nick/Prakash/Iowa - “We have extracted the data for our 124
patients”
* Jay P./UNMC - could look at this, though not this week (24 May).
* survey: diagnoses and procedures for consented Breast Cancer Study
patients
<https://redcap.gpcnetwork.org/surveys/?s=EEF8DKCA4T>project
home<https://redcap.gpcnetwork.org/redcap_v6.11.5/index.php?pid=55>
* #513<https://informatics.gpcnetwork.org/trac/Project/ticket/513> ~3%
missing breast-cancer diagnosis data due to opt-out at UMN
<https://informatics.gpcnetwork.org/trac/Project/ticket/513>Justin/UMN - “We
were able to match 95 of our 98 BC patients in the CDM. The missing 3 were
excluded from our CDM build because they have since opted-out of having their
data available for general research purposes. I'm not sure how we'll deal with
this.”
* #511 (HERON CDM misses CONDITION
table)<https://informatics.gpcnetwork.org/trac/Project/ticket/511> - ETA?
6.
Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db>
due Jun 27
* #358<https://informatics.gpcnetwork.org/trac/Project/ticket/358>
NAACCR ETL: update all sites to include summary of treatment
etc.<https://informatics.gpcnetwork.org/trac/Project/ticket/358>
* how many sites can we get started?
* Iowa (?) - done
* UMN - done
* UTSW - Phillip will verify; should be done.
* MCW/George - need to work on this; didn’t use KU code.
* Dan - best way to verify that sites have the new ETL done is to
update Babel to show summary of treatment, if not site-specific factors.
* Dan/KU will update Babel for KU to include the new section.
* #169 (MCW cancer tumor registry terms out of date on GPC term
sharing service ...)
reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/169#comment:24>
________________________________
--
Dan
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