What else for tomorrow? The UNMC demo of CDM meds should be interesting.
* gpc-dev 14 June shared
notes<https://docs.google.com/document/d/1ZZyRfonBQX2OjnpI0oq2TARRlf4XpgXqYJqnY73VEZE/edit>;
scribe: UMN
________________________________
1. Convene, take roll, review records and plan next meeting
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC , MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU,
IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: UMN
* reminders from current work by owner
site<https://informatics.gpcnetwork.org/trac/Project/report/11>:
* MU: #509 (geocoding ETL code: establish shared version control
repository)<https://informatics.gpcnetwork.org/trac/Project/ticket/509>
* comments on the agenda? on last week’s notes
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)? OK to record
the UNMC demo of CDM meds?
* recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> FYI
(note also recent ticket comments
report<https://informatics.gpcnetwork.org/trac/Project/report/13>):
No FYI tickets this week; all recently opened/closed tickets are scheduled for
discussion below.
* Next Meeting: 21 June LV to chair. scribe?
* Note LRU
schedule<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>,
which nominates UTHSCSA, UIOWA …
2.
Milestone:ht-wt-survey-agg<https://informatics.gpcnetwork.org/trac/Project/milestone/ht-wt-survey-agg>
due 13 Jun
#512<https://informatics.gpcnetwork.org/trac/Project/ticket/512> collate Health
and Medical Research Family Survey (HMRFS) results
<https://informatics.gpcnetwork.org/trac/Project/ticket/512>Sounds like it’s
done; details to appear
3.
Milestone:adaptable-accrual<https://informatics.gpcnetwork.org/trac/Project/milestone/adaptable-accrual>
due 13 Jun
* ADAPTABLE Computable Phenotype
Update<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002934.html>
Swander, Lena C
* #353<https://informatics.gpcnetwork.org/trac/Project/ticket/353>
accrue first patient to ADAPTABLE
study<https://informatics.gpcnetwork.org/trac/Project/ticket/353> - are we
there yet?
4.
Milestone:data-domains3<https://informatics.gpcnetwork.org/trac/Project/milestone/data-domains3>
new DCQ: response due 6/24.
#473<https://informatics.gpcnetwork.org/trac/Project/ticket/473> PCORnet CDMv3
SAS prep-to-research
Readiness<https://informatics.gpcnetwork.org/trac/Project/ticket/473>
* CDM encounter types and CDM
refresh<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002915.html> Justin
Dale
* Sites at risk for 24 Jun?
DRN OC hasn’t sent query (scheduled for 10 Jun) to UTHSCSA
5. GPC Feasibility Query: National Diabetes Amputation Prevention
Study<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002947.html> Tamara
McMahon
“The queries are located on Babel at Shared\LEA.
Submit the patient counts via this
survey<https://redcap.gpcnetwork.org/surveys/?s=YC99YTYRLH>. Deadline is
6/28/2016.”
6.
Milestone:bc-dx-px<https://informatics.gpcnetwork.org/trac/Project/milestone/bc-dx-px>
due 20 Jun (4 weeks into 2-6 week period after 24 May)
* #448<https://informatics.gpcnetwork.org/trac/Project/ticket/448> all
diagnoses and procedures for breast cancer cohort
<https://informatics.gpcnetwork.org/trac/Project/ticket/448>survey: diagnoses
and procedures for consented Breast Cancer Study
patients<https://redcap.gpcnetwork.org/surveys/?s=EEF8DKCA4T> (project
home<https://redcap.gpcnetwork.org/redcap_v6.11.5/index.php?pid=55>)
Sites at risk for 20 Jun?
* #513<https://informatics.gpcnetwork.org/trac/Project/ticket/513> ~3%
missing breast-cancer diagnosis data due to opt-out at UMN
<https://informatics.gpcnetwork.org/trac/Project/ticket/513>critical path?
7.
Milestone:antibiotic-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/antibiotic-study-data>,
milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data>
- due 4 Jul
* #489<https://informatics.gpcnetwork.org/trac/Project/ticket/489>
antibiotic study post-award processes
<https://informatics.gpcnetwork.org/trac/Project/ticket/489>DC: to invite Dan
Hale to join a gpc-dev call in an effort to close some gaps between us and the
ABX study. 8 June invitation
<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002930.html>Attachment Study
Protocol_ABX_updated_3.8.2016.doc<https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/492/Study%20Protocol_ABX_updated_3.8.2016.doc><https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/492/Study%20Protocol_ABX_updated_3.8.2016.doc>
added to #492
* #514<https://informatics.gpcnetwork.org/trac/Project/ticket/514> JM to
discuss with bariatric study developers to see if we can get away without
RX_DAYS_SUPPLY.
* #492<https://informatics.gpcnetwork.org/trac/Project/ticket/492> How
to Build SAS CDM v3 Medication Tables
<https://informatics.gpcnetwork.org/trac/Project/ticket/492>JRC to distribute
code for i2b2 to CDM
Attachment
DISPENSING_PRESCRIBING_EXTRACTS.txt<https://informatics.gpcnetwork.org/trac/Project/attachment/ticket/492/DISPENSING_PRESCRIBING_EXTRACTS.txt><https://informatics.gpcnetwork.org/trac/Project/raw-attachment/ticket/492/DISPENSING_PRESCRIBING_EXTRACTS.txt>
added
JRC to demo UNMC CDM medications (prescribing, dispensing)
* #103<https://informatics.gpcnetwork.org/trac/Project/ticket/103>
subject of observation (e.g. maternal findings relevant to
child)<https://informatics.gpcnetwork.org/trac/Project/ticket/103> closed
wontfix
ABX study protocol mentions it; re-open?
8.
Milestone:cohort-char-als<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-als>
due Jul 11
#304<https://informatics.gpcnetwork.org/trac/Project/ticket/304> accuracy of
ALS diagnosis data
collection<https://informatics.gpcnetwork.org/trac/Project/ticket/304> update
from Mish Jun 7
9.
Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db>
due 5 Sep
* #358<https://informatics.gpcnetwork.org/trac/Project/ticket/358>
NAACCR ETL: update all sites to include summary of treatment
etc.<https://informatics.gpcnetwork.org/trac/Project/ticket/358>
* how many sites can we get started? How many can we get all the way
to babel?
* Dan/KUMC will update Babel for KU to include the new section.
* Iowa (?) - done
* UMN - done
* UTSW - Phillip will verify; should be done.
* MCW/George - need to work on this; didn’t use KU code.
* #169 (MCW cancer tumor registry terms out of date on GPC term
sharing service ...)
reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/169#comment:24>
10. #155<https://informatics.gpcnetwork.org/trac/Project/ticket/155>
correlating observations with encounters
<https://informatics.gpcnetwork.org/trac/Project/ticket/155>CDM v3
procedures/encounter EPIC
installations<http://listserv.kumc.edu/pipermail/gpc-dev/2016q2/002933.html>
Debbie Yoshihara
________________________________
--
Dan
_______________________________________________
Gpc-dev mailing list
[email protected]
http://listserv.kumc.edu/mailman/listinfo/gpc-dev
