I will scribe tomorrow (Jay Pedersen, UNMC).
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Today's Topics:
1. scribe for tomorrow: UNMC? IU? UTHSCSA? (Dan Connolly)
2. Re: [gpc-informatics] #335: reduce DataBuilder dependencies
to i2b2 platform: ant, JVM, JDBC, jboss (GPC Informatics)
3. null start_date in NAACCR ETL? (Dan Connolly)
----------------------------------------------------------------------
Message: 1
Date: Mon, 29 Aug 2016 14:39:28 +0000
From: Dan Connolly <[email protected]>
To: "<[email protected]>" <[email protected]>
Subject: scribe for tomorrow: UNMC? IU? UTHSCSA?
Message-ID:
<[email protected]>
Content-Type: text/plain; charset="iso-8859-1"
Based our least-recently-scribed
list<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:97>, I
nominate UNMC to scribe tomorrow. How about it?
Or if IU or UTHSCSA would do it, let me know.
--
Dan
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Message: 2
Date: Mon, 29 Aug 2016 15:26:11 +0000
From: "GPC Informatics" <[email protected]>
To: [email protected], [email protected], [email protected],
[email protected]
Cc: [email protected], [email protected]
Subject: Re: [gpc-informatics] #335: reduce DataBuilder dependencies
to i2b2 platform: ant, JVM, JDBC, jboss
Message-ID:
<01000156d6e86a43-39f44c8a-bf97-4bea-9e6e-326c739afe7d-000...@email.amazonses.com>
Content-Type: text/plain; charset="utf-8"
#335: reduce DataBuilder dependencies to i2b2 platform: ant, JVM, JDBC, jboss
--------------------------+--------------------------------
Reporter: dconnolly | Owner:
Type: enhancement | Status: reopened
Priority: minor | Milestone: cohort-char-bc-db
Component: data-sharing | Resolution:
Keywords: | Blocked By:
Blocking: |
--------------------------+--------------------------------
Changes (by dconnolly):
* priority: major => minor
* milestone: gpc2sites => cohort-char-bc-db
Comment:
I still hope to "finish" this, but I don't think it's currently blocking
anyone's work.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/335#comment:44>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
------------------------------
Message: 3
Date: Mon, 29 Aug 2016 15:46:45 +0000
From: Dan Connolly <[email protected]>
To: Tony French <[email protected]>
Cc: "<[email protected]>" <[email protected]>
Subject: null start_date in NAACCR ETL?
Message-ID:
<[email protected]>
Content-Type: text/plain; charset="windows-1252"
Tony writes:
I followed your Heron naaccr load
scripts<https://informatics.gpcnetwork.org/trac/Project/wiki/NAACCR_ETL> and
noticed that several of the resulting OBSERVATION_FACT.START_DATE values where
null. The cases that I checked made sense as they were related to demographics
and not necessarily an event. However, START_DATE is one of the 7 Primary Key
fields and Oracle doesn?t support null values in a PK field. How do you guys
typically handle that? Do you just default the start date or set it to some
constant value when it?s null? (We generally use the Patient Dimension for
demographics.)
We don't get any null start_dates using this code. For most observations,
including demographics, the code populates start_date from ne."Date of
Diagnosis". Every record in our NAACCR file has date of diagnosis populated.
For reference: the relevant code was written March 2012
(763e47f<https://github.com/kumc-bmi/heron/commit/763e47ffa17e0167ef1ade9949fcb89d282e2553>)
and revised Oct 2015
(f59bd0d<https://github.com/kumc-bmi/heron/commit/f59bd0dafabdc959423907161465e886177aac0e>).
--
Dan
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