For the 8 sites participating in the breast cancer data collection, please
install
pandas<http://pandas.pydata.org/pandas-docs/stable/install.html#installing-pandas-with-miniconda>
(if you have not already) and confirm that you can read and write relevant CSV
files, e.g. your cohort with a study_id column:
import pandas as pd
cohort = pd.read_csv("my_cohort.csv")
print len(cohort)
Please confirm by making a note in #297 collect breast cancer data from GPC
sites<https://informatics.gpcnetwork.org/trac/Project/ticket/297> or by email
to me and/or gpc-dev.
I estimate installation should take 10 minutes or less. If it's not working
after 15 minutes, let me know and I'll figure something out.
References:
*
<http://pandas.pydata.org/pandas-docs/stable/install.html#installing-pandas-with-miniconda>
GPC Breast Cancer Second Data
Pull<https://docs.google.com/presentation/d/1LANts9zyDNyR3uPoArU04tsrxaC2Ao3rQyRk9JRPg9c/edit#slide=id.p>
* #214 breast cancer linked study database available for
analysis<https://informatics.gpcnetwork.org/trac/Project/ticket/214>
--
Dan
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