What else for tomorrow?
* 8 Nov gpc-dev shared
notes<https://docs.google.com/document/d/1ip9oD1ZcWDnMb1jb9OhiSUa-hFKjUyDPX9ssZ6rVrKc/edit>;
scribe: UTSW
________________________________
1. Convene, take roll, review records and plan next meeting
* Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: UTSW
* comments on the agenda? On last week’s notes? No.
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* No FYI ticket changes this week
* PI-CONNECT data for Dr. Sullivan
Postponed. Stay tuned.
* Next Meeting: 15 Nov; scribe: MU?
Note LRU
schedule<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>,
which nominates MU, MCW, …
* Reminder:
HackathonFour<https://informatics.gpcnetwork.org/trac/Project/wiki/HackathonFour>
17-18 Jan 2017 at KUMC in Kansas City, KS
* We got a project timeline for
Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d>.
More on that over the coming week.
2.
Milestone:bariatric-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/bariatric-study-data>,
Milestone:antibiotic-study-data<https://informatics.gpcnetwork.org/trac/Project/milestone/antibiotic-study-data>
* #524<https://informatics.gpcnetwork.org/trac/Project/ticket/524>
Analytic Aim 1 individual-level
query<https://informatics.gpcnetwork.org/trac/Project/ticket/524> closed fixed
2 Nov message from Dr. Arterburn (Bariatric PI): “I’m pleased to report that we
have surpassed the [large N] patient threshold that we had hoped for when we
wrote the grant. This is a huge success in and of itself, and we should all be
proud of what we have accomplished in bringing together such a large, multisite
cohort of patients. … I’d like to thank the 33 Data Marts that have provided
data – and everyone on the teams who worked so hard to accomplish this”
* Winter - July 2017: Aim 2 Individual and Aggregate Level Queries
No work due before then, right?
3.
Milestone:cdm-refresh6<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-refresh6>
incoming popmednet query ETA 7 Nov; reply due 16 Dec
* #530<https://informatics.gpcnetwork.org/trac/Project/ticket/530> specs
(SAS code) for Cycle 2 of PCORnet Data Characterization
<https://informatics.gpcnetwork.org/trac/Project/ticket/530>Has anybody
received the query via popmednet?
* #499<https://informatics.gpcnetwork.org/trac/Project/ticket/499>
integrate i2p-transform with HERON ETL meds (dispensing)
<https://informatics.gpcnetwork.org/trac/Project/ticket/499>closed fixed
10818850e118: Surescripts/NDC ETL <https://github.com/kumc-bmi/heron/pull/22>
pull request
* #522<https://informatics.gpcnetwork.org/trac/Project/ticket/522>
"DAYS_SUPPLY" column in CDM v3 prescribing table not populated with
i2p-transform at KUMC
<https://informatics.gpcnetwork.org/trac/Project/ticket/522>Mike is testing
days_supply_4196<https://github.com/kumc-bmi/heron/tree/days_supply_4196>
ec160cb1c5fb
* #515<https://informatics.gpcnetwork.org/trac/Project/ticket/515> IU
CDM lacks encounter-procedure
data<https://informatics.gpcnetwork.org/trac/Project/ticket/515> - still on
track? done?
* For bonus points: babel update
* #517<https://informatics.gpcnetwork.org/trac/Project/ticket/517> MU
CDM: No Access to DRN OC Resources due to lack of procedure
data<https://informatics.gpcnetwork.org/trac/Project/ticket/517>
4.
Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db>
- due 31 Oct
* #297<https://informatics.gpcnetwork.org/trac/Project/ticket/297>: Site
status, issues
* KUMC: initial data 4 Oct. done
* UNMC: initial data 13 Oct
* Chasing down 2 MRNs yet this week.
* Meds not ready yet.
* UMN: initial data 14 Oct; done.
* WISC: initial data 24 Oct; done.
* UTSW: initial data 26 Oct
* #493<https://informatics.gpcnetwork.org/trac/Project/ticket/493>
additional cases
* MCRF: initial data 3 Nov;
* #471 (MCRF tumor registry data not available in standard NAACCR
file format)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/471#comment:16>
* Laurel to upload current dataset (done) and also continue work
on consolidating the duplicate, valid records.
* #480<https://informatics.gpcnetwork.org/trac/Project/ticket/480>
missing morphology
* UIOWA: ETA Mon 31 Oct
* Will work on upload.
* MCW: ETA Fri 28 Oct 4 Nov
* Sequence numbers?
#466<https://informatics.gpcnetwork.org/trac/Project/ticket/466>
* Examined nodes?
#482<https://informatics.gpcnetwork.org/trac/Project/ticket/482>
* #538 (medications by VA class not available from MCW)
created<https://informatics.gpcnetwork.org/trac/Project/ticket/538>
* #480<https://informatics.gpcnetwork.org/trac/Project/ticket/480> -
update MORPH3 table from WHO ICDO3
page<http://www.who.int/classifications/icd/adaptations/oncology/en/>?
________________________________
--
Dan
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