What else for tomorrow?
* 21 Mar gpc-dev shared
notes<https://docs.google.com/document/d/17Vx3k5JjQFULfSRWDZPVaCCmXwZXGffMW4XXK9uWLcs/edit>
scribe: MU
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* roll: all 12
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU
Reminder - put institution after your name in GoToMeeting preferences
* today's scribe: MU
* comments on the agenda? On last week’s notes?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* none
* Next Meetings:
Note LRU scribe schedule in
#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92>
* 28 Mar: Dan at AMIA. Cancel? Recruit chair?
* 4 Apr scribe: UTHSCSA?
* Integrating hospital billing: UHC ETL
scripts<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003668.html> -
preferred date to discuss?
2.
Milestone:grouse-research-1<https://informatics.gpcnetwork.org/trac/Project/milestone/grouse-research-1>
* #564 (Crosswalk files from 6 sites back from GDIT)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/564#comment:7>
fixed!
Overlap between CMS data and KUMC finder file: ~1.4M
3.
Milestone:cdm-cycle3<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-cycle3>
checkpoint ~3 Apr
* #580<https://informatics.gpcnetwork.org/trac/Project/ticket/580> Data
Characterization - Cycle 2, Refresh 2
Tracking<https://informatics.gpcnetwork.org/trac/Project/ticket/580>:
Here's a list of themes received by one or more sites:
1
Incorrect CDM version in HARVEST table. Update to 3.0.
WISC
2
Incorrect DATAMART_NAME in HARVEST table.
Marshfield, Regenstrief Indiana, KUMC, UTHSCSA
3
the % of encounters without a principal diagnosis was calculated incorrectly in
the EDC report/will be below 10% threshold.
Marshfield, UNMC, Regenstrief Indiana, UTHSCSA
4
Future Dates - enrollment end date (July 2016) after refresh date (June 2016)
Iowa
5
ICD9 diagnosis codes do not appear to be valid codes
KUMC
6
ICD10 diagnosis codes do not appear to be valid codes
Regenstrief/Indiana?<https://informatics.gpcnetwork.org/trac/Project/wiki/Regenstrief/Indiana>,
UTHSCSA (100%), Either Missouri or Minnesota (message sent to T.Meyer, but
datamart referenced was C4UMO not C4UMA)
7
Data coded as ICD9 after the ICD9/10 transition dates in the Diagnosis and
Procedures tables.
Iowa
8
Orphan Encounter IDs - if the encounter appears on a data record, it's expected
to exist in the Encounter table
Iowa
9
Dispensing records in DataMart_All, but nothing in Dispensing DC
Iowa
* CDM V3.X PROCEDURES
<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003720.html>JRC: during
DRNOC discussions, it became clear that how the procedures tables is populated
varies widely between datamarts - 12x in some cases.
Labs were deemed relevant to be coded as procedures. What is appropriate for
GPC to fall under the procedure tables?
Discussion continued after the scheduled time; it wasn’t entirely conclusive.
* interoperable procedure order ontology by looking at link between
orders and billing
transactions?<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003731.html>
Russ Waitman
1.
Milestone:snow-shrine-1<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-1>
due 20 Mar
* #460<https://informatics.gpcnetwork.org/trac/Project/ticket/460> SNOW
SHRINE node at UTSW
<https://informatics.gpcnetwork.org/trac/Project/ticket/460>SNOW Shrine
Ontologies<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003718.html>
Phillip Reeder Thu Mar 9
* Update shrine-1 milestone ETA? I.e. leading sites (WISC, UTSW, MCRF,
IU) operational
2.
Milestone:snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2>
due ~Apr
* #280<https://informatics.gpcnetwork.org/trac/Project/ticket/280>,
MEDICATIONS metadata for SCILHS
* UNMC will install SCILHS metadata into Babel.
* Note Russ/KUMC March 15 feedback
comment:16<https://informatics.gpcnetwork.org/trac/Project/ticket/280#comment:16>
* JRC to solicit input Marsolo and company from the national
antibiotics study
https://github.com/CDMFORUM/CDM-GUIDANCE/issues
* Tom/Debbie/WISC
review<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003741.html>
* Status at shrine-2 sites:
* KUMC
#567<https://informatics.gpcnetwork.org/trac/Project/ticket/567>: we’re making
steady progress on install/configure/network (e.g. 9 Mar comment:8); a bit
behind on ontology mapping; still aiming for 30 Apr, but perhaps only
demographics and diagnoses
* CMH
#586<https://informatics.gpcnetwork.org/trac/Project/ticket/586>: at-risk as of
7 Mar
* IU (see shrine-1 above)
* UIOWA - ?
* WISC (see shrine-1 above)
* MCW - ?
* MCRF (see shrine-1 above)
* UMN
#461<https://informatics.gpcnetwork.org/trac/Project/ticket/461> - updates
since
HackathonThree<https://informatics.gpcnetwork.org/trac/Project/wiki/HackathonThree>
Jan 2016?
* MU - ?
* UNMC
#532<https://informatics.gpcnetwork.org/trac/Project/ticket/532> - needed WISC
help with networking 10 Mar
* UTHSCSA - ?
* UTSW (see shrine-1 above)
3.
Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db>
due 13 Mar
* #584<https://informatics.gpcnetwork.org/trac/Project/ticket/584>
Possible blended registry
record<https://informatics.gpcnetwork.org/trac/Project/ticket/584> (WISC)
* 13 Mar update: “honest broker will verify and import the data into
GPC REDCap”
* #358<https://informatics.gpcnetwork.org/trac/Project/ticket/358>
NAACCR ETL: update all sites to include summary of treatment etc.
<https://informatics.gpcnetwork.org/trac/Project/ticket/358>News from Jay /
UNMC since 24 Oct?
________________________________
--
Dan
_______________________________________________
Gpc-dev mailing list
[email protected]
http://listserv.kumc.edu/mailman/listinfo/gpc-dev
