What else for tomorrow?
* gpc-dev shared notes 7
Oct<https://docs.google.com/document/d/16GdRPZdazsdzCGq-vQ6MIA6TwZClcLcAoLDJMmI-1kg/edit#>;
scribe: MU
current snapshot:
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* Roll: Reminder - put institution after your name in GoToMeeting
preferences
* all 12 GPC
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF/MCR, UMN, UNMC, UTHSCSA, UTSW,
MU, IU
* Cancer RCR project sites? UFL, VUMC, MUSC, LSU
* Today's scribe: MU
* comments on the agenda? On last week’s
notes<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004309.html>?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* #570 (collect expanded obesity cohort data: demographics, income,
insurance / ...)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/570#comment:57>
fixed
* #140 (socio-economic status based on geographic context)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/140#comment:75>
fixed
* #379 (Link EHR data to Health and Medical Research Family Survey
(HMRFS) 2 ...)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/379#comment:48>
fixed
* Next meeting(s): 14 Nov, scribe?
* Note LRU scribe schedule in
#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:97>
* Global RCR
Meeting<http://listserv.kumc.edu/pipermail/gpc-rcr/2017-October/000034.html>
Nov 14
2.
Milestone:cancer-rcr-1<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-1>
due Nov 20
* Thanks to sites that completed the surveys:
#645 (Complete REDCap survey for NAACCR solid tumor data - RCR Aim 1 Task 1.A.)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/645#comment:14>
fixed
#648 (Complete REDCap survey for CDM billing data - RCR Aim 1 Task 1.B.)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/648#comment:10>
fixed
#649 (Complete REDCap survey for CDM test /med data - RCR Aim 1 Tasks 1.C and
...)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/649#comment:8>
fixed
#668 (UMN - Complete Cancer RCR Aim 1 Task 1.A., 1.B, 1.C, 1.E
surveys)<https://informatics.gpcnetwork.org/trac/Project/ticket/668> closed
fixed
* #669 (LSU - Complete Cancer RCR Aim 1 Task 1.A., 1.B, 1.C, 1.E
surveys) created<https://informatics.gpcnetwork.org/trac/Project/ticket/669>
* #666<https://informatics.gpcnetwork.org/trac/Project/ticket/666>
Review of EDC reports site survey responses on data holdings
<https://informatics.gpcnetwork.org/trac/Project/ticket/666>Executive Committee
results … survey results document
<https://docs.google.com/document/d/1AA4MT_k4kGzrYgzgVx7jl5dtslvxtg8C_t3AnPjBfs8/edit?usp=sharing>Brian
-- Have more details by dev call next week (7 Nov)
* #665<https://informatics.gpcnetwork.org/trac/Project/ticket/665> EDC
reports
<https://informatics.gpcnetwork.org/trac/Project/ticket/665>specifically
looking for 4.G RXNORM mapping
GPC Redcap project: PCORNet CDM Empirical Data Characterization (EDC) report
sharing
<https://redcap.gpcnetwork.org/surveys/?s=9LT4KE8NFD>UFL, VUMC, MUSC, LSU -
please provide Table IV from your most recent EDC report to
brian-gryz...@uiowa.edu<mailto:brian-gryz...@uiowa.edu>
* #656<https://informatics.gpcnetwork.org/trac/Project/ticket/656> CDM:
Finalize specifications on which CDM tables to pull and provide guidance to
sites<https://informatics.gpcnetwork.org/trac/Project/ticket/656>
* (Brian / Brad) CDM tables - we will have a response on which CDM
tables will be requested from RCR sites on the 7 NOV dev call.
* #650<https://informatics.gpcnetwork.org/trac/Project/ticket/650>
Guidance to sites on loading infusion data
<https://informatics.gpcnetwork.org/trac/Project/ticket/650>Nick, is the
guidance Russ gave good enough?
* #660 (Pull and submit tumor analysis dataset and CDM tables for cohort
(1st ...) created<https://informatics.gpcnetwork.org/trac/Project/ticket/660>
* Last week:
Brian will update the Aim 1 Task List
<https://docs.google.com/spreadsheets/d/1fY5rR0W4tUEslxjLcXo0J9kDcP2IY7G_i_7mKGr2S9o/edit?usp=sharing>
by COB on 10/31 to clarify RCR tasks (including items discussed on this dev
call).
Brian will send an email to the RCR list to confirm this was done.
* Done: [Gpc-rcr] RCR project
updates<http://listserv.kumc.edu/pipermail/gpc-rcr/2017-November/000041.html>
Gryzlak, Brian M
*
CancerRCR<https://informatics.gpcnetwork.org/trac/Project/wiki/CancerRCR> info
* cancer-rcr-1
depgraph<https://informatics.gpcnetwork.org/trac/Project/depgraph/milestone/cancer-rcr-1>
* Reserve time soon after Nov 20
3.
Milestone:next-d<https://informatics.gpcnetwork.org/trac/Project/milestone/next-d>
due Dec 4
Regrets: Alona
* #571<https://informatics.gpcnetwork.org/trac/Project/ticket/571>
characterization of data from next-d GPC sites
<https://informatics.gpcnetwork.org/trac/Project/ticket/571>Mei now has MCW,
UTSW, IU (+UTHSCSA)
Pending: UIOWA, UNMC, MU, KUMC, UMN
* #539<https://informatics.gpcnetwork.org/trac/Project/ticket/539>
Next-D Clinical
Variables<https://informatics.gpcnetwork.org/trac/Project/ticket/539> - review
of definitions
* #545 Study sample and DM sample definition for next-d
<https://informatics.gpcnetwork.org/trac/Project/ticket/545>On track for all
sites to submit study sample in 4 weeks? (Dec 4)
When to present query instructions?
4.
Milestone:snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2>
due Dec 18
* #332<https://informatics.gpcnetwork.org/trac/Project/ticket/332> How
to deal with & in i2b2 paths, especially in NAACCR tumor registry ontology?
<https://informatics.gpcnetwork.org/trac/Project/ticket/332>Revise installation
instruction (#459<https://informatics.gpcnetwork.org/trac/Project/ticket/459>)
to skip proxy?
* #532<https://informatics.gpcnetwork.org/trac/Project/ticket/532> SNOW
SHRINE node at UNMC with SCILHS PCORnet
ontology<https://informatics.gpcnetwork.org/trac/Project/ticket/532>
* SHRINE -- index definitions on OBSERVATION_FACT table for POSTGRES
DB?<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004378.html> Pedersen,
Jay G
* #531<https://informatics.gpcnetwork.org/trac/Project/ticket/531> SNOW
SHRINE node at MCRF with SCILHS PCORnet
ontology<https://informatics.gpcnetwork.org/trac/Project/ticket/531>
* #575<https://informatics.gpcnetwork.org/trac/Project/ticket/575> SNOW
SHRINE 1.20.1 install for
IU<https://informatics.gpcnetwork.org/trac/Project/ticket/575>
* #627<https://informatics.gpcnetwork.org/trac/Project/ticket/627> New
custom authentication provider at MCW blocking SHRINE requests to
i2b2<https://informatics.gpcnetwork.org/trac/Project/ticket/627>
* #90<https://informatics.gpcnetwork.org/trac/Project/ticket/90>
Diagnoses Modifiers for data attribution
<https://informatics.gpcnetwork.org/trac/Project/ticket/90>Stoddard / MCW: “I
estimate … a week of dedicated work... Scheduling that with existing
priorities, ... likely to be early Jan 2018.”
Reeder 2 Nov<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004399.html>:
“For the GPC SHRINE, the approach of starting without modifiers, then adding
them later seems appropriate. ...”
5.
Milestone:grouse-3<https://informatics.gpcnetwork.org/trac/Project/milestone/grouse-3>
due Jan 8
* etl-dev progress, FYI
* #320 (Load synthetic CMS Medications Part D data as NDC codes)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/320#comment:10>
fixed
* #321 (Query by CMS Medicaions Part D - map NDC to RxNorm in
metadata)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/321#comment:5>
fixed
* #623<https://informatics.gpcnetwork.org/trac/Project/ticket/623>
training for GROUSE SQL
queries<https://informatics.gpcnetwork.org/trac/Project/ticket/623>
* “I added a
GROUSE#GeocodingIntegration<https://informatics.gpcnetwork.org/trac/Project/wiki/GROUSE#GeocodingIntegration>
section; noteably: it's scheduled for Jan 2018.”
________________________________
--
Dan
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