What else for tomorrow?
* gpc-dev 5 Dec shared
notes<https://docs.google.com/document/d/1Ffj3Ey6Qcw3g267nkMgYZNBRc_0xZneQmNK7rT0-0jc/edit>;
scribe: UMN
________________________________
1. Convene, take roll, review records and plan next meeting(s)
* 11:00am Central Time.
Meeting ID and access code:
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1
(571) 317-3131
* Roll: Reminder - put institution after your name in GoToMeeting
preferences
* all 12 GPC
DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams>
represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF/MCRI, UMN, UNMC, UTHSCSA, UTSW,
MU, IU
* Cancer RCR project sites? UFL, VUMC, MUSC, LSU
* Today's scribe: UMN
* comments on the agenda? On last week’s
notes<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004309.html>?
(#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI
(i.e. not intended for discussion)
* #613 (IU update spoke(s) with prod hub cert)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/613#comment:14>
fixed
* #658 (Develop process for GPC sites to transfer data to KUMC)
reopened<https://informatics.gpcnetwork.org/trac/Project/ticket/658#comment:8>
* #666 (Review of EDC reports site survey responses on data holdings)
closed<https://informatics.gpcnetwork.org/trac/Project/ticket/666#comment:14>
fixed
* Next meeting(s): 12 Dec; scribe?
* Note LRU scribe schedule in
#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:97>
* HackathonFive
Registration<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004418.html> by
Jan 12
details sufficient to justify air fare due at T-8 weeks = Dec 18, 2017
2.
Milestone:cancer-rcr-1<https://informatics.gpcnetwork.org/trac/Project/milestone/cancer-rcr-1>
due Dec 4?
* #653<https://informatics.gpcnetwork.org/trac/Project/ticket/653> Run
query to identify
cohort<https://informatics.gpcnetwork.org/trac/Project/ticket/653> closed
* MU “sequence number (560/380) is something we will need to fix in
the load as well.”
* UNMC “... breast cancer …” typo? (the cohort is not constrained by
primary site)
* #673<https://informatics.gpcnetwork.org/trac/Project/ticket/673>
Respond to Aim 1 Survey
feedback<https://informatics.gpcnetwork.org/trac/Project/ticket/673>
* IU: PRESCRIBING "Unfortunately, this appears to be a limitation for
our involvement."
* MU: looking into this (Infused therapies, usually HCPCS Level II
codes in PROCEDURES) but at risk.
* UMN to confirm specifics such as trastuzumab in CDM PROCEDURES
* VUMC to confirm presence of infused therapies with their CDM team
in a different department.
* #667 CDM: Determine CDM code list (e.g. ICD/HCPCS/RXCUI/NDC) to create
analysis variables for each
patient<https://informatics.gpcnetwork.org/trac/Project/ticket/667> - UNMC and
NDC codes
* JRC / UNMC to send benchmark molecular testing frequencies (done)
* #657 (NAACCR: Determine tumor analysis dataset formatting) closed
<https://informatics.gpcnetwork.org/trac/Project/ticket/657#comment:9> fixed
* #675<https://informatics.gpcnetwork.org/trac/Project/ticket/675>
regulatory approval to select Cancer RCR cohort by real DX dates?
<https://informatics.gpcnetwork.org/trac/Project/ticket/675>“UIOWA IRB
determined that the activities described were not human subjects research
(approval
memo)<https://drive.google.com/file/d/1lRHQLQ5LkqZEpJwqWdSm3oz8_j8ATYiN/view>”
Sites: KUMC, MU, UMN?, UNMC, UTSW, VUMC
* #655<https://informatics.gpcnetwork.org/trac/Project/ticket/655>
NAACCR: Develop query to pull tumor analysis dataset and distribute query to
sites
<https://informatics.gpcnetwork.org/trac/Project/ticket/655>“I have the query
to pull the NAACCR data. The main blocker at this point is [#675]”
* KUMC would like to test, even if we can’t send results
* MCRF, MUSC, UFL indicated that they're all set to use real dates
* Dec 4 target…
3.
Milestone:snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2>
due Dec 18
* #90<https://informatics.gpcnetwork.org/trac/Project/ticket/90>
Diagnoses Modifiers for data attribution
<https://informatics.gpcnetwork.org/trac/Project/ticket/90>Diagnosis Modifier
Example - GPC to PCORI
Modifiers<http://listserv.kumc.edu/pipermail/gpc-dev/2017q4/004430.html>
Phillip Reeder
4. Milestone:gpc-phase2-h5
<https://informatics.gpcnetwork.org/trac/Project/milestone/gpc-phase2-h5>It’s
not clear from 19 Sep, 26 Sep notes who has the ball to do what next...
* #431<https://informatics.gpcnetwork.org/trac/Project/ticket/431>
Deploy free text notes and de-identification at majority of GPC sites
(milestone 2.12.1)
<https://informatics.gpcnetwork.org/trac/Project/ticket/431>KUMC + MCW + …
volunteers? nominations?
* MCRF - George - to help find standalone package details (12 Sep)
(done, right? But I don’t see notes about it)
* UNMC - to follow-up with those who can speak to resource allocation
* IU - will ask Bill Barnett (site PI)
* UTSW - “based on Kris’s spreadsheet, this looks feasible”
* #573<https://informatics.gpcnetwork.org/trac/Project/ticket/573>
de-identified text notes for on a cohort-by-cohort basis
<https://informatics.gpcnetwork.org/trac/Project/ticket/573>Kris at MCW to
generate spreadsheet of 5-20 popular note types, how they are mapped at their
site, and general descriptions to guide mapping at other sites. (done… ball
goes to UTSW?)
________________________________
--
Dan
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