Sounds great! Quick note, our ontology is currently in release 3.1, not 2.2: https://github.com/ARCH-commons/arch-ontology/blob/master/README.md
I see that some of our READMEs on GitHub are outdated, but version #s in the ontology are correct. Thanks, Jeff Jeffrey Klann, PhD Instructor of Medicine, Harvard Medical School Director, SCILHS Query Core From: "Campbell, James R" <campb...@unmc.edu> Date: Monday, February 19, 2018 at 2:48 PM To: Jeffrey KLANN <jeff.kl...@mgh.harvard.edu> Cc: "Narayana, Yeshwanth R" <yeshwanth.naray...@unmc.edu>, "Pedersen, Jay G" <jay.peder...@unmc.edu>, "Campbell, Walter S" <wcamp...@unmc.edu>, GPC STANDARDS <email@example.com> Subject: SHRINESCILHS metadata enhancements and maintenance plan proposed by Nebraska Jeff From our call 10 days ago, we are proceeding with the plan below for support of i2b2 metadata for our SNOW SHRINE network. Relative to the INITIAL release and to support SCILHS sites that want to use our metadata expansions, we propose to add the following metadata sets to SCILHS 2.20: 1) SNOMED CT diagnoses grafted onto the "\PCORI\DIAGNOSIS\SM\" root in DIAGNOSIS in DIAGNOSIS 2) New Lab/Path LOINC ontology grafted onto "\PCORI\LAB_RESULT_CM\LAB_CODES\" in LAB_RESULT_CM 3) New medications by ingredient grafted onto "\PCORI\MEDICATION\INGREDIENT\" in MEDICATIONS 4) SNOMED CT Procedure history grafted onto "\PCORI\PROCEDURE\SM\" in PROCEDURES OPERATIONAL PROPOSAL NEBRASKA I2B2 SNOW SHRINE METADATA PUBLICATION AND SUPPORT February 19, 2018 1. OBJECTIVES: * Provide timely, comprehensive and historically complete i2b2 metadata for relevant subsets of all ONC terminology and HIPAA transaction standards specifically SNOMED CT(Clinical Findings, Events, Situations, Procedures, Organisms), LOINC(laboratory and clinical), RXNORM, NDC, ICD*, ICD-10-PCS and CPT4 * Provide resources for sites to easily and quickly process metadata updates in order to encourage prompt installation of terminology updates and synchronization for interoperation across SNOW SHRINE network. The goal will be to support metadata version update via DELTA with < 4 hours of technical time per site. 1. RELEASE AND MAINTENANCE SCHEDULE: * All publication files will be freely available through Nebraska Lexicon website repository. Users will be required to have a valid UMLS account and license to negotiate security and download SNOMED CT (and probably CPT4) * Support six monthly maintenance cycle (April-October to allow processing of SNOMED International and NLM|US extension) * Strict version control will be maintained, supported by version specific release notes number 1.0, 1.1, etc. * Release notes will accompany each version release and detail standards development and metadata changes * All i2b2 metadata will be distributed as: * a current FULL release of Nebraska Lexicon© metadata tables in CSV format with accompanying load scripts. Historical FULL releases will be archived and deleted from the site. * a version specific DELTA metadata update consisting of SQL files to update metadata from the last release * FULL and DELTA SHRINE adapter metadata sets * All DELTA releases will be maintained historically in the repository and documented by version. * An INITIAL release forking development from SCILHS 2.2 and ACT with DELTA to Nebraska Lexicon 1.0 will be published for those sites who are currently using those ontologies. * A library of web references to the EPIC and CERNER userwebs supporting ETL sharing between sites using compatible software 1. Other NEBRASKA LEXICON© Publications Supported six monthly * RF2 release of Nebraska Lexicon© SNOMED CT extension including laboratory, anatomic and molecular pathology and clinical modules. * RF2 release of SNOMED CT LOINC mapsets * Coded and structured CAP® Cancer Checksheets distributed as PDF and Excel spreadsheets Nebraska Lexicon© SNOMED CT web browser inclusive of laboratory, anatomic and molecular pathology and clinical terminology enhancements. The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender. The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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