I’ve got the SQL Code and have created the i2b2 views for our CDM. Haven’t gotten beyond that but if anyone else wants to work on it.
From Jeff Klann: https://github.com/ARCH-commons/arch-utils/tree/master/i2b2_on_PCORnet Also a demo version in Docker: https://github.com/ARCH-commons/arch-utils/wiki/Install-dockerized-i2b2-on-PCORnet If you get to working on it, I haven’t implemented all the modifiers or the new tables since CDM 3.1, so would love to see a pull request! From: Gpc-dev <gpc-dev-boun...@listserv.kumc.edu> on behalf of Dan Connolly <dconno...@kumc.edu> Date: Monday, December 17, 2018 at 8:57 AM To: "narayana.mazum...@allina.com" <narayana.mazum...@allina.com> Cc: "jeff.kl...@mgh.harvard.edu" <jeff.kl...@mgh.harvard.edu>, "," <gpc-dev@listserv.kumc.edu> Subject: toward i2b2 on PCORNet CDM At HackathonSix<https://informatics.gpcnetwork.org/trac/Project/wiki/HackathonSix>, a couple sites have PCORNet CDM datamarts but not i2b2 yet. I dug up my notes on the topic; here you go: * Web services for data warehouses: OMOP and PCORnet on i2b2<https://academic.oup.com/jamia/advance-article/doi/10.1093/jamia/ocy093/5061849> Jeffrey G Klann Lori C Phillips Christopher Herrick Matthew A H Joss Kavishwar B Wagholikar Shawn N Murphy Journal of the American Medical Informatics Association, ocy093, https://doi.org/10.1093/jamia/ocy093<https://doi.org/10.1093/jamia/ocy093> Published: 30 July 2018 From: Klann, Jeffrey G. <jeff.kl...@mgh.harvard.edu> Sent: Friday, September 07, 2018 12:39 PM * Our paper<https://doi.org/10.1093/jamia/ocy093> about running i2b2 on PCORnet and OMOP * A dockerized demo<https://github.com/ARCH-commons/arch-utils/wiki/Install-dockerized-i2b2-on-PCORnet> of this we showed at AMIA last fall * Our Github repository<https://github.com/ARCH-commons/arch-utils/tree/master/i2b2_on_PCORnet>. Note that the documentation needs some work, would be happy to have your help! -- Dan ________________________________ UT Southwestern Medical Center The future of medicine, today.
_______________________________________________ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
