Just to share with the GPC-dev group notes from the PCORnet Data WG meeting on July 17.
Discussion on data quality checks on labs * Problem: lab completeness check requires >80% of labs reported with normal ranges, which many sites feel uncomfortable in assigning one if it does not come automatically from the EMR. * Proposed easy solution: simplify the check by reporting whether a lab is a clinical vs statistical outlier (defined based on PCORnet population). * Long-term fix (CDM 6.0): introduce a new CDM table to be called “reference range history” that would contain following elements for each lab: * Lab (LOINC) * Gender * Age (go/from) * Race * Normal range * Units * Effective dates When reporting normal ranges of labs, indicate whether it is derived from the EMR or the reference range table. Note that the long-term fix of adding a reference range history table will require extra work from the sites. The timeline for the work is not confirmed yet, but sites can start working on it. Please let me know if you would like to discuss during the gpc-dev call. Thanks, Mei From: Gpc-dev <gpc-dev-boun...@listserv.kumc.edu> On Behalf Of Dan Connolly Sent: Monday, July 20, 2020 8:55 AM To: gpc-dev@listserv.kumc.edu Subject: gpc-dev 21 July agenda and meeting notes What else for tomorrow? UTHSCSA is scheduled to scribe https://docs.google.com/document/d/18NSOQU1dKCc6Hzv_-TpJQnNQ_TBo-zs5Af1AfXH051Y/edit 1. Convene, take roll, review records and plan the next meeting(s). * 11:00 a.m. Central Time. Meeting ID and access code: 817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 (571) 317-3131 * Roll; Reminder - put site after your name in GoToMeeting<https://global.gotomeeting.com/meeting/join/817393381> preferences GPC DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> represented? KUMC (chair), UIOWA, MCW, MCRI, UNMC, UTHSCSA (scribe), UTSW, MU, IndianaU, Utah, Allina, Intermountain, UTH * Comments on the agenda? (ref SoftwareDev#tracking<https://informatics.gpcnetwork.org/trac/Project/wiki/SoftwareDev#tracking>) On last week’s notes?<https://docs.google.com/document/d/18NSOQU1dKCc6Hzv_-TpJQnNQ_TBo-zs5Af1AfXH051Y/edit#heading=h.9ioc8gnd1ijp> (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>) Recent tickets opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI (i.e. not intended for discussion) * None this week * Next meeting(s): Jul 28; scribe: UTSW?, IU? * Note scribe rotation<https://docs.google.com/document/d/1fPoDn0pdVvC-Mct58X7wkGD2rNiId8aNZ9JG_WCbcf4/edit#heading=h.zbjzupqx0rh7> appendix * #759<https://informatics.gpcnetwork.org/trac/Project/ticket/759> covid19 PCORNet datamarts<https://informatics.gpcnetwork.org/trac/Project/ticket/759> 28 May “pause additional ETL development” until PCORI completes its review… Russ standing by for more info * Dan/KUMC to get more info about volume / quality issues where the line was divided (not immediately) * Marshfield will submit Bardet-Biedl Syndrome request through DROC 1. PCORnet CDM refresh with PPRL<https://informatics.gpcnetwork.org/trac/Project/wiki/PPRL> - due July 27 * C4UI r024 Approved<http://listserv.kumc.edu/pipermail/gpc-dev/2020q3/011015.html> gold star! 1. Milestone:tumor-reg-18<https://informatics.gpcnetwork.org/trac/Project/milestone/tumor-reg-18> aiming for Jul 10 * #749<https://informatics.gpcnetwork.org/trac/Project/ticket/749> PCORNet style TUMOR table<https://informatics.gpcnetwork.org/trac/Project/ticket/749> * Brian to update gpc-dev w.r.t. DROC request * #739<https://informatics.gpcnetwork.org/trac/Project/ticket/739> HERON NAACCR ETL outdated by v18<https://informatics.gpcnetwork.org/trac/Project/ticket/739> kumc-bmi/naaccr-tumor-data<https://github.com/kumc-bmi/naaccr-tumor-data> * DC to look into patient_mapping using item 2300 MRN 1. 1228 covid query due July 21 PR: what’s expected, given May 28 “pause additional ETL development”? Steph to ask DRNOC to clarify. DC to confirm Russ is attending today’s PCORnet steering committee meeting and suggest that he seek clarification. Done: 1228 covid query due July 21? <http://listserv.kumc.edu/pipermail/gpc-dev/2020q3/011014.html> Block, Jason Perry,M.D. wash your hands ...<https://www.cdc.gov/coronavirus/2019-ncov/prepare/prevention.html> -- Dan
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