you must be on sles as this segfaults only on sles to my knowledge :-) i am looking for a NSD or manager node in your cluster that runs at 100% cpu usage.
do you have zimon deployed to look at cpu utilization across your nodes ? sven On Fri, Mar 24, 2017 at 10:08 AM Aaron Knister <aaron.s.knis...@nasa.gov> wrote: Hi Sven, Which NSD server should I run top on, the fs manager? If so the CPU load is about 155%. I'm working on perf top but not off to a great start... # perf top PerfTop: 1095 irqs/sec kernel:61.9% exact: 0.0% [1000Hz cycles], (all, 28 CPUs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Segmentation fault -Aaron On 3/24/17 1:04 PM, Sven Oehme wrote: > while this is happening run top and see if there is very high cpu > utilization at this time on the NSD Server. > > if there is , run perf top (you might need to install perf command) and > see if the top cpu contender is a spinlock . if so send a screenshot of > perf top as i may know what that is and how to fix. > > sven > > > On Fri, Mar 24, 2017 at 9:43 AM Aaron Knister <aaron.s.knis...@nasa.gov > <mailto:aaron.s.knis...@nasa.gov>> wrote: > > Since yesterday morning we've noticed some deadlocks on one of our > filesystems that seem to be triggered by writing to it. The waiters on > the clients look like this: > > 0x19450B0 ( 6730) waiting 2063.294589599 seconds, SyncHandlerThread: > on ThCond 0x1802585CB10 (0xFFFFC9002585CB10) (InodeFlushCondVar), reason > 'waiting for the flush flag to commit metadata' > 0x7FFFDA65E200 ( 22850) waiting 0.000246257 seconds, > AllocReduceHelperThread: on ThCond 0x7FFFDAC7FE28 (0x7FFFDAC7FE28) > (MsgRecordCondvar), reason 'RPC wait' for allocMsgTypeRelinquishRegion > on node 10.1.52.33 <c0n3271> > 0x197EE70 ( 6776) waiting 0.000198354 seconds, > FileBlockWriteFetchHandlerThread: on ThCond 0x7FFFF00CD598 > (0x7FFFF00CD598) (MsgRecordCondvar), reason 'RPC wait' for > allocMsgTypeRequestRegion on node 10.1.52.33 <c0n3271> > > (10.1.52.33/c0n3271 <http://10.1.52.33/c0n3271> is the fs manager > for the filesystem in question) > > there's a single process running on this node writing to the filesystem > in question (well, trying to write, it's been blocked doing nothing for > half an hour now). There are ~10 other client nodes in this situation > right now. We had many more last night before the problem seemed to > disappear in the early hours of the morning and now its back. > > Waiters on the fs manager look like this. While the individual waiter is > short it's a near constant stream: > > 0x7FFF60003540 ( 8269) waiting 0.001151588 seconds, Msg handler > allocMsgTypeRequestRegion: on ThMutex 0x1802163A2E0 (0xFFFFC9002163A2E0) > (AllocManagerMutex) > 0x7FFF601C8860 ( 20606) waiting 0.001115712 seconds, Msg handler > allocMsgTypeRelinquishRegion: on ThMutex 0x1802163A2E0 > (0xFFFFC9002163A2E0) (AllocManagerMutex) > 0x7FFF91C10080 ( 14723) waiting 0.000959649 seconds, Msg handler > allocMsgTypeRequestRegion: on ThMutex 0x1802163A2E0 (0xFFFFC9002163A2E0) > (AllocManagerMutex) > 0x7FFFB03C2910 ( 12636) waiting 0.000769611 seconds, Msg handler > allocMsgTypeRequestRegion: on ThMutex 0x1802163A2E0 (0xFFFFC9002163A2E0) > (AllocManagerMutex) > 0x7FFF8C092850 ( 18215) waiting 0.000682275 seconds, Msg handler > allocMsgTypeRelinquishRegion: on ThMutex 0x1802163A2E0 > (0xFFFFC9002163A2E0) (AllocManagerMutex) > 0x7FFF9423F730 ( 12652) waiting 0.000641915 seconds, Msg handler > allocMsgTypeRequestRegion: on ThMutex 0x1802163A2E0 (0xFFFFC9002163A2E0) > (AllocManagerMutex) > 0x7FFF9422D770 ( 12625) waiting 0.000494256 seconds, Msg handler > allocMsgTypeRequestRegion: on ThMutex 0x1802163A2E0 (0xFFFFC9002163A2E0) > (AllocManagerMutex) > 0x7FFF9423E310 ( 12651) waiting 0.000437760 seconds, Msg handler > allocMsgTypeRelinquishRegion: on ThMutex 0x1802163A2E0 > (0xFFFFC9002163A2E0) (AllocManagerMutex) > > I don't know if this data point is useful but both yesterday and today > the metadata NSDs for this filesystem have had a constant aggregate > stream of 25MB/s 4kop/s reads during each episode (very low latency > though so I don't believe the storage is a bottleneck here). Writes are > only a few hundred ops and didn't strike me as odd. > > I have a PMR open for this but I'm curious if folks have seen this in > the wild and what it might mean. > > -Aaron > > -- > Aaron Knister > NASA Center for Climate Simulation (Code 606.2) > Goddard Space Flight Center > (301) 286-2776 <tel:(301)%20286-2776> > _______________________________________________ > gpfsug-discuss mailing list > gpfsug-discuss at spectrumscale.org <http://spectrumscale.org> > http://gpfsug.org/mailman/listinfo/gpfsug-discuss > > > > _______________________________________________ > gpfsug-discuss mailing list > gpfsug-discuss at spectrumscale.org > http://gpfsug.org/mailman/listinfo/gpfsug-discuss > -- Aaron Knister NASA Center for Climate Simulation (Code 606.2) Goddard Space Flight Center (301) 286-2776 _______________________________________________ gpfsug-discuss mailing list gpfsug-discuss at spectrumscale.org http://gpfsug.org/mailman/listinfo/gpfsug-discuss
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