On 02/09/2014 09:01 AM, Juan I. Perotti wrote: > Hello, > > I am trying to install graph-tool in sagemath ( check > http://www.sagemath.org/ <http://www.sagemath.org/> ), under Ubuntu 12.04. > > Basically, sagemath is python with many good modules helpful for > mathematics, and why not physics. > > sagemath has its own built version of python, which is standard by using a > virtual environment. The idea is, I guess, not to mess up with your system > python. > > By typing in a terminal > > $ sage -sh > > > you enter into sagemath virtual environment, which looks like: > > (sage -sh) $ > > > therefore, if you try to run a python console by typing > > (sage -sh)$ python > > > then, it will run the python built in sage's virtual environment. > > From the virtual environment I have installed CGAL, and then, I tried to > configure graph-tool typing: > > (sage -sh) graph-tool-2.2.29$ ./configure > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... /bin/mkdir -p > checking for gawk... no > checking for mawk... mawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether make supports nested variables... (cached) yes > checking for style of include used by make... GNU > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking whether gcc understands -c and -o together... yes > checking dependency style of gcc... gcc3 > checking for library containing strerror... none required > checking how to run the C preprocessor... cpp > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking minix/config.h usability... no > checking minix/config.h presence... no > checking for minix/config.h... no > checking whether it is safe to define __EXTENSIONS__... yes > checking whether we are using the GNU C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... gcc3 > checking for gcc option to accept ISO C99... unsupported > checking for gcc option to accept ISO C89... (cached) none needed > checking for gcc option to accept ISO Standard C... (cached) none needed > checking how to run the C++ preprocessor... g++ -E > checking for ANSI C header files... (cached) yes > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking how to print strings... printf > checking for a sed that does not truncate output... /bin/sed > checking for fgrep... /bin/grep -F > checking for ld used by gcc... ld > checking if the linker (ld) is GNU ld... yes > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B > checking the name lister (/usr/bin/nm -B) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 1572864 > checking whether the shell understands some XSI constructs... yes > checking whether the shell understands "+="... yes > checking how to convert x86_64-unknown-linux-gnu file names to > x86_64-unknown-linux-gnu format... func_convert_file_noop > checking how to convert x86_64-unknown-linux-gnu file names to toolchain > format... func_convert_file_noop > checking for ld option to reload object files... -r > checking for objdump... objdump > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for archiver @FILE support... @ > checking for strip... strip > checking for ranlib... ranlib > checking command to parse /usr/bin/nm -B output from gcc object... ok > checking for sysroot... no > checking for mt... mt > checking if mt is a manifest tool... no > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fPIC -DPIC > checking if gcc PIC flag -fPIC -DPIC works... yes > checking if gcc static flag -static works... yes > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (ld -m elf_x86_64) supports shared > libraries... yes > checking whether -lc should be explicitly linked in... no > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... no > checking how to run the C++ preprocessor... g++ -E > checking for ld used by g++... ld -m elf_x86_64 > checking if the linker (ld -m elf_x86_64) is GNU ld... yes > checking whether the g++ linker (ld -m elf_x86_64) supports shared > libraries... yes > checking for g++ option to produce PIC... -fPIC -DPIC > checking if g++ PIC flag -fPIC -DPIC works... yes > checking if g++ static flag -static works... yes > checking if g++ supports -c -o file.o... yes > checking if g++ supports -c -o file.o... (cached) yes > checking whether the g++ linker (ld -m elf_x86_64) supports shared > libraries... yes > checking dynamic linker characteristics... (cached) GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking target system type... x86_64-unknown-linux-gnu > checking whether to enable debug info...... no > checking whether C++ compiler supports -std=gnu++11... yes > checking whether to enable function inlining...... yes > checking whether to enable optimizations...... yes > checking whether to enable symbol visibility manipulation...... yes > checking whether to enable graph filtering...... yes > checking whether to enable parallel algorithms with openmp...... no > checking whether to enable cairo drawing...... yes > checking whether to enable sparsehash...... yes > checking for main in -lm... yes > checking for main in -lbz2... yes > checking for main in -lexpat... yes > ================ > Detecting python > ================ > checking for a Python interpreter with version >= 2.6... python > checking for python... > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/python > checking for python version... 2.7 > checking for python platform... linux2 > checking for python script directory... > ${prefix}/lib/python2.7/site-packages > checking for python extension module directory... > ${exec_prefix}/lib/python2.7/site-packages > checking for python2.7... (cached) > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/python > checking for a version of Python >= '2.1.0'... yes > checking for a version of Python == '2.7.5'... yes > checking for the distutils Python package... yes > checking for Python include path... > -I/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include/python2.7 > checking for Python library path... > -L/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local/lib > -lpython2.7 > checking for Python site-packages path... > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages > checking python extra libraries... -lpthread -ldl -lutil > checking python extra linking flags... -Xlinker -export-dynamic > checking consistency of all components of python development environment... > yes > graph-tool will be installed at: > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages > =========================== > Using python version: 2.7.5 > =========================== > checking for boostlib >= 1.38.0... yes > checking whether the Boost::Python library is available... yes > checking for exit in -lboost_python... yes > checking whether the Boost::Iostreams library is available... yes > checking for exit in -lboost_iostreams... yes > checking whether the Boost::Regex library is available... yes > checking for exit in -lboost_regex... yes > checking whether the Boost::Graph library is available... yes > checking for exit in -lboost_graph... yes > checking for main in -lCGAL... yes > checking whether to cgal debbuging with valgrind...... no > checking python module: numpy... yes > checking for > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h... > yes > checking python module: scipy... yes > checking > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/scipy/weave/scxx/object.h > usability... yes > checking > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/scipy/weave/scxx/object.h > presence... yes > checking for > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/scipy/weave/scxx/object.h... > yes > checking expat.h usability... yes > checking expat.h presence... yes > checking for expat.h... yes > checking CGAL/version.h usability... no > checking CGAL/version.h presence... no > checking for CGAL/version.h... no > configure: error: CGAL headers not found > > > As you can see, the config is using sage's version of python. However, it > does not find CGAL's headers. Do you know why?
Where did you install CGAL? If you installed it in a non-standard directory, this needs to be passed to the configure script via the CPPFLAGS and LDFLAGS variables. Check the output in the config.log file, which includes the reason why CGAL was not found. You can post the contents of this file to the list, if you are unable to find the problem. Best, Tiago -- Tiago de Paula Peixoto <[email protected]>
signature.asc
Description: OpenPGP digital signature
_______________________________________________ graph-tool mailing list [email protected] http://lists.skewed.de/mailman/listinfo/graph-tool
