Hi, I'm sorry, I completely missed the gcc >= 4.8 requirement. So, I will try to install a newer version of gcc and try again.
Regards, On Thu, Apr 23, 2015 at 4:21 PM, Santiago Videla <[email protected]> wrote: > Hi, > > I'm trying to compile from sources but I'm getting some errors. While > "configure" went well on checking all dependecies, when I run make I got a > bunch of errors compiling graph_blockmodel.lo (full traceback has 1.1MB, so > I included only the end of it below) > > Any idea of what could be the issue? Does anyone compiled graph-tool on > Debian 7? > > Regards, > > $ ./configure --enable-openmp > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... /bin/mkdir -p > checking for gawk... no > checking for mawk... mawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether make supports nested variables... (cached) yes > checking for style of include used by make... GNU > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking whether gcc understands -c and -o together... yes > checking dependency style of gcc... gcc3 > checking for library containing strerror... none required > checking how to run the C preprocessor... gcc -E > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking minix/config.h usability... no > checking minix/config.h presence... no > checking for minix/config.h... no > checking whether it is safe to define __EXTENSIONS__... yes > checking for g++... g++ > checking whether we are using the GNU C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... gcc3 > checking for gcc option to accept ISO C99... unsupported > checking for gcc option to accept ISO C89... (cached) none needed > checking for gcc option to accept ISO Standard C... (cached) none needed > checking how to run the C++ preprocessor... g++ -E > checking for ANSI C header files... (cached) yes > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking how to print strings... printf > checking for a sed that does not truncate output... /bin/sed > checking for fgrep... /bin/grep -F > checking for ld used by gcc... /usr/bin/ld > checking if the linker (/usr/bin/ld) is GNU ld... yes > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B > checking the name lister (/usr/bin/nm -B) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 1572864 > checking how to convert x86_64-unknown-linux-gnu file names to > x86_64-unknown-linux-gnu format... func_convert_file_noop > checking how to convert x86_64-unknown-linux-gnu file names to toolchain > format... func_convert_file_noop > checking for /usr/bin/ld option to reload object files... -r > checking for objdump... objdump > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for ar... ar > checking for archiver @FILE support... @ > checking for strip... strip > checking for ranlib... ranlib > checking command to parse /usr/bin/nm -B output from gcc object... ok > checking for sysroot... no > checking for a working dd... /bin/dd > checking how to truncate binary pipes... /bin/dd bs=4096 count=1 > checking for mt... mt > checking if mt is a manifest tool... no > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fPIC -DPIC > checking if gcc PIC flag -fPIC -DPIC works... yes > checking if gcc static flag -static works... yes > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports > shared libraries... yes > checking whether -lc should be explicitly linked in... no > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... no > checking how to run the C++ preprocessor... g++ -E > checking for ld used by g++... /usr/bin/ld -m elf_x86_64 > checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports > shared libraries... yes > checking for g++ option to produce PIC... -fPIC -DPIC > checking if g++ PIC flag -fPIC -DPIC works... yes > checking if g++ static flag -static works... yes > checking if g++ supports -c -o file.o... yes > checking if g++ supports -c -o file.o... (cached) yes > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports > shared libraries... yes > checking dynamic linker characteristics... (cached) GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking target system type... x86_64-unknown-linux-gnu > checking whether to enable debug info...... no > checking whether C++ compiler supports -std=gnu++11... yes > checking whether to enable function inlining...... yes > checking whether to enable optimizations...... yes > checking whether to enable symbol visibility manipulation...... yes > checking whether to enable parallel algorithms with openmp...... yes > checking whether to enable cairo drawing...... yes > checking for main in -lm... yes > checking for main in -lbz2... no > checking for main in -lexpat... yes > ================ > Detecting python > ================ > checking for a Python interpreter with version >= 2.6... python > checking for python... /usr/bin/python > checking for python version... 2.7 > checking for python platform... linux2 > checking for python script directory... > ${prefix}/lib/python2.7/dist-packages > checking for python extension module directory... > ${exec_prefix}/lib/python2.7/dist-packages > checking for python2.7... (cached) /usr/bin/python > checking for a version of Python >= '2.1.0'... yes > checking for a version of Python == '2.7.3'... yes > checking for the distutils Python package... yes > checking for Python include path... -I/usr/include/python2.7 > checking for Python library path... -L/usr/lib -lpython2.7 > checking for Python site-packages path... /usr/lib/python2.7/dist-packages > checking python extra libraries... -lpthread -ldl -lutil -lm > checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 > -Wl,-Bsymbolic-functions > checking consistency of all components of python development > environment... yes > graph-tool will be installed at: /usr/lib/python2.7/dist-packages > =========================== > Using python version: 2.7.3 > =========================== > checking for boostlib >= 1.53.0... yes > checking whether the Boost::Python library is available... yes > checking for exit in -lboost_python... yes > checking whether the Boost::Iostreams library is available... yes > checking for exit in -lboost_iostreams... yes > checking whether the Boost::Regex library is available... yes > checking for exit in -lboost_regex... yes > checking whether the Boost::Graph library is available... yes > checking for exit in -lboost_graph... yes > checking for main in -lCGAL... yes > checking whether to cgal debbuging with valgrind...... no > checking python module: numpy... yes > checking for > /usr/lib/pymodules/python2.7/numpy/core/include/numpy/arrayobject.h... yes > checking python module: scipy... yes > checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h > usability... yes > checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h > presence... yes > checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... > yes > checking expat.h usability... yes > checking expat.h presence... yes > checking for expat.h... yes > checking CGAL/version.h usability... yes > checking CGAL/version.h presence... yes > checking for CGAL/version.h... yes > checking for pkg-config... /usr/bin/pkg-config > checking pkg-config is at least version 0.9.0... yes > checking for CAIROMM... yes > checking python module: cairo... yes > checking pycairo/pycairo.h usability... yes > checking pycairo/pycairo.h presence... yes > checking for pycairo/pycairo.h... yes > checking whether to enable sparsehash...... yes > checking for SPARSEHASH... yes > checking sparsehash/dense_hash_set usability... yes > checking sparsehash/dense_hash_set presence... yes > checking for sparsehash/dense_hash_set... yes > checking that generated files are newer than configure... done > configure: creating ./config.status > config.status: creating Makefile > config.status: creating src/Makefile > config.status: creating src/graph/Makefile > config.status: creating src/graph/centrality/Makefile > config.status: creating src/graph/clustering/Makefile > config.status: creating src/graph/community/Makefile > config.status: creating src/graph/correlations/Makefile > config.status: creating src/graph/draw/Makefile > config.status: creating src/graph/flow/Makefile > config.status: creating src/graph/generation/Makefile > config.status: creating src/graph/layout/Makefile > config.status: creating src/graph/search/Makefile > config.status: creating src/graph/spectral/Makefile > config.status: creating src/graph/stats/Makefile > config.status: creating src/graph/topology/Makefile > config.status: creating src/graph/util/Makefile > config.status: creating src/graph_tool/Makefile > config.status: creating config.h > config.status: config.h is unchanged > config.status: executing depfiles commands > config.status: executing libtool commands > configure: Modifying libtool to correctly link libstdc++ before anything > else... > > > $ make > .... > .... > .... > Making all in community > make[4]: Entering directory > `/home/santiago/Downloads/graph-tool-2.2.42/src/graph/community' > CXX graph_blockmodel.lo > .... > .... > .... > graph_blockmodel.cc:430:76: required from here > graph_blockmodel.cc:336:105: error: no matching function for call to > ‘graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned > int>::ConstantPropertyMap(<brace-enclosed initializer list>)’ > graph_blockmodel.cc:336:105: note: candidates are: > In file included from ./../graph.hh:35:0, > from ./../graph_filtering.hh:21, > from graph_blockmodel.cc:28: > ./../graph_properties.hh:606:5: note: > graph_tool::ConstantPropertyMap<Value, Key>::ConstantPropertyMap() [with > Value = std::array<int, 1ul>; Key = long unsigned int] > ./../graph_properties.hh:606:5: note: candidate expects 0 arguments, 1 > provided > ./../graph_properties.hh:605:5: note: > graph_tool::ConstantPropertyMap<Value, Key>::ConstantPropertyMap(const > value_type&) [with Value = std::array<int, 1ul>; Key = long unsigned int; > graph_tool::ConstantPropertyMap<Value, Key>::value_type = std::array<int, > 1ul>] > ./../graph_properties.hh:605:5: note: no known conversion for argument 1 > from ‘<brace-enclosed initializer list>’ to ‘const value_type& {aka const > std::array<int, 1ul>&}’ > ./../graph_properties.hh:596:7: note: constexpr > graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned > int>::ConstantPropertyMap(const > graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&) > ./../graph_properties.hh:596:7: note: no known conversion for argument 1 > from ‘<brace-enclosed initializer list>’ to ‘const > graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&’ > ./../graph_properties.hh:596:7: note: constexpr > graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned > int>::ConstantPropertyMap(graph_tool::ConstantPropertyMap<std::array<int, > 1ul>, long unsigned int>&&) > ./../graph_properties.hh:596:7: note: no known conversion for argument 1 > from ‘<brace-enclosed initializer list>’ to > ‘graph_tool::ConstantPropertyMap<std::array<int, 1ul>, long unsigned int>&&’ > make[4]: *** [graph_blockmodel.lo] Error 1 > make[4]: Leaving directory > `/home/santiago/Downloads/graph-tool-2.2.42/src/graph/community' > make[3]: *** [all-recursive] Error 1 > make[3]: Leaving directory > `/home/santiago/Downloads/graph-tool-2.2.42/src/graph' > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory `/home/santiago/Downloads/graph-tool-2.2.42/src' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/home/santiago/Downloads/graph-tool-2.2.42' > make: *** [all] Error 2 > > -- > Santiago Videla > http://www.linkedin.com/in/svidela > -- Santiago Videla http://www.linkedin.com/in/svidela
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