On 01-12-15 14:51, Paulo van Breugel wrote:


On Tue, Dec 1, 2015 at 2:04 PM, Helmut Kudrnovsky <[email protected] <mailto:[email protected]>> wrote:

    pvanbosgeo wrote
    > When running a script (r.biodiversity) in GRASS 7.0 for Windows, I am
    > getting the warning:
    >
    > WARNING: Unable to rename cell file
    > 'C:\GIS\GrassJvdS/latlong/YLD_NUT/.tmp/unknown/3988.0' to
    > 'C:\GIS\GrassJvdS/latlong/YLD_NUT/fcell/Shan3_CA_Renyi_0_0':
    File exists
    > WARNING: Unable to rename null file
    > 'C:\GIS\GrassJvdS/latlong_2005/YLD_NUT/.tmp/unknown/4100.1' to
    >
    'C:\GIS\GrassJvdS/latlong_2005/YLD_NUT/cell_misc/Shan3_CA_Renyi_1_0/null':
    > File exists

    tested here:

    r.biodiversity -r --verbose
    input=spec1@data,spec2@data,spec3@data,spec4@data,spec5@data
    output=renyi
    alpha=0,1,2
    WARNING: Unable to rename null file
    'C:\grassdata/test3035/data/.tmp/unknown/1680.1' to
    'C:\grassdata/test3035/data/cell_misc/renyi_Renyi_0_0/null': File
    exists
    WARNING: Unable to rename cell file
    'C:\grassdata/test3035/data/.tmp/unknown/1680.0' to
    'C:\grassdata/test3035/data/fcell/renyi_Renyi_0_0': File exists
    WARNING: Unable to rename null file
    'C:\grassdata/test3035/data/.tmp/unknown/8936.1' to
    'C:\grassdata/test3035/data/cell_misc/renyi_Renyi_1_0/null': File
    exists
    WARNING: Unable to rename cell file
    'C:\grassdata/test3035/data/.tmp/unknown/8936.0' to
    'C:\grassdata/test3035/data/fcell/renyi_Renyi_1_0': File exists
    WARNING: Unable to rename null file
    'C:\grassdata/test3035/data/.tmp/unknown/9328.1' to
    'C:\grassdata/test3035/data/cell_misc/renyi_Renyi_2_0/null': File
    exists
    WARNING: Unable to rename cell file
    'C:\grassdata/test3035/data/.tmp/unknown/9328.0' to
    'C:\grassdata/test3035/data/fcell/renyi_Renyi_2_0': File exists

    is there some overwriting of existing files in the script? AFAIR
    there may
    be some issues with overwriting existing files in windows os.

Thanks Helmut. Yes, the script does also overwrite some intermediate files (with r.mapcalc). I will look into that and see how to change that.

Hi Helmut, you were absolutely right, the problem was with r.mapcalc overwriting some intermediate files, so I changed that. I don't have Windows myself, but had a quick try on my colleagues computer, and it seems to work now. Thanks for your help.


I wonder though, if I use overwrite on the command line, there is no problem. So than that would be a problem specific to grass.script.mapcalc ?



    -----
    best regards
    Helmut
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