I know. The same thing happened on one of my student's machines when I asked him to turn off SIP and try this, then turn it back on and try it.
In my experience, whenever you compile a program, it is necessary to set a path for the resulting binaries. This can be a default (like /usr/local/...) or something different. This should not matter in the binaries ultimately. But I will say that wxPython has continued to exhibit odd behavior under SIP for some reason. I noticed that it runs install_tool on some of its binaries at the end of the compile. I don't know if this is part of the problem or it is in GRASS, where I also have to point configure at the location of the wx libraries that are being used to compile it. My current thought is that this error is sort of bogus but may help point to whatever the real problem is. It is possible to patch over the whole thing with a rerun of install_tool at some point near the end of GRASS binary creation, and I may have to resort to that. But I'd rather try to find a way to eliminate this issue in a more comprehensive way. Maybe that's not possible--or I don't have enough skill to do it. Michael ____________________ C. Michael Barton Director, Center for Social Dynamics & Complexity Professor of Anthropology, School of Human Evolution & Social Change Head, Graduate Faculty in Complex Adaptive Systems Science Arizona State University voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu > On Jun 13, 2016, at 7:25 AM, Adam Dershowitz <[email protected]> wrote: > > Strange. Because you local path is explicitly in the binary. Here is what > shows for the libraries for _core_.so on my machine. I don’t see why > disabling SIP should change this: > > $otool -L /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so > /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so: > /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current > version 56.0.0) > > /Users/cmbarton/grass_source/wxp3/usr/local/lib/libwx_osx_cocoau-3.0.0.2.0.dylib > (compatibility version 3.0.0, current version 3.0.0) > /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit > (compatibility version 1.0.0, current version 275.0.0) > /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon > (compatibility version 2.0.0, current version 155.0.0) > /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa > (compatibility version 1.0.0, current version 19.0.0) > > /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox > (compatibility version 1.0.0, current version 1.0.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current > version 169.3.0) > /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL > (compatibility version 1.0.0, current version 1.0.0) > /usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version > 1669.0.0) > > /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation > (compatibility version 150.0.0, current version 744.19.0) > > /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices > (compatibility version 1.0.0, current version 45.0.0) > > > > > Perhaps without SIP, it falls back to searching another way, instead of just > using this path? While with SIP, it only uses the explicit path? > The libraries are present in the application bundle, so the problem is just > “telling” it where to look for them. > > -- Adam > > > > > > > > > On 6/13/16, 10:15 AM, "Michael Barton" <[email protected]> wrote: > >> Except that this error only occurs with SIP enabled. Disable SIP and the >> error goes away and everything runs fine. >> >> Michael Barton >> School of Human Evolution &Social Change >> Center for Social Dynamics & Complexity >> Arizona State University >> >> ...Sent from my iPad >> >>> On Jun 13, 2016, at 6:18 AM, Adam Dershowitz <[email protected]> >>> wrote: >>> >>> I was traveling last week, so just got to this. >>> >>> No luck. And, it doesn’t look like a SIP issue. Instead, the path is now >>> hard coded to something on your machine. Here is the error I get when it >>> try to open the application: >>> >>> $ '/Applications/GRASS-7.3.app/Contents/MacOS/grass.sh'; exit >>> Rebuilding Addon HTML manual pages index... >>> Rebuilding Addon menu... >>> Python 2.7.10 found. >>> Cleaning up temporary files... >>> Starting GRASS GIS... >>> Traceback (most recent call last): >>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/gis_set.py", >>> line 31, in <module> >>> from core import globalvar >>> File >>> "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/globalvar.py", >>> line 96, in <module> >>> import wx >>> File >>> "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/__init__.py", >>> line 45, in <module> >>> from wx._core import * >>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core.py", >>> line 4, in <module> >>> import _core_ >>> ImportError: >>> dlopen(/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so, >>> 2): Library not loaded: >>> /Users/cmbarton/grass_source/wxp3/usr/local/lib/libwx_osx_cocoau-3.0.0.2.0.dylib >>> Referenced from: >>> /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so >>> Reason: image not found >>> ERROR: Error in GUI startup. See messages above (if any) and if necessary, >>> please report this error to the GRASS developers. >>> On systems with package manager, make sure you have the right GUI package, >>> probably named grass-gui, installed. >>> To run GRASS GIS in text mode use the -text flag. >>> Exiting... >>> logout >>> Saving session... >>> ...copying shared history... >>> ...saving history...truncating history files... >>> ...completed. >>> >>> >>> [Process completed] >>> >>> >>> >>> >>> >>> >>> >>> -- Adam >>> >>> >>> >>> >>> >>> >>> >>> >>> >>>> On 6/9/16, 8:37 PM, "Michael Barton" <[email protected]> wrote: >>>> >>>> I've replaced the build from earlier today with one that is sort of >>>> wxPython 3.0.3.0 >>>> >>>> >>>> >>>> There was no straightforward way to build this. The only thing on github >>>> is the wxpython part. For a full source package it needs to be combined >>>> with wxWidgets and both compiled together. The 3.0.2.0 source package has >>>> the wxpython folder inside the wxwidgets source folder. Seems easy enough. >>>> So I downloaded the latest wxpython and the latest wxwidgets, dropped the >>>> wxpython folder inside the wxwidgets folder and compiled. After solving >>>> some compiling issues, it all built. >>>> >>>> >>>> >>>> Then I tried to build GRASS against the result. No problem with the build. >>>> But when I went to run it, it had a version mismatch error between >>>> wxpython and wxwidgets that disabled 3D. >>>> >>>> >>>> >>>> So I tried again by replacing the wxpython directory in the 3.0.2.0 source >>>> with the new wxpython folder from github. Again, this compiled without >>>> problems, and GRASS compiled against it without errors. >>>> >>>> >>>> >>>> When I run GRASS, it again complains of a version mismatch but it doesn't >>>> seem to have any effects. So I've posted this one on the website for now. >>>> It does fix the plot.py bug but I can't see any other difference. Maybe >>>> you can. >>>> >>>> >>>> >>>> I'll be very interested to hear if this runs under SIP. >>>> >>>> >>>> >>>> Cheers >>>> >>>> Michael >>>> >>>> ____________________ >>>> >>>> C. Michael Barton >>>> >>>> Director, Center for Social Dynamics & Complexity >>>> >>>> Professor of Anthropology, School of Human Evolution & Social Change >>>> >>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>> >>>> Arizona State University >>>> >>>> >>>> >>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>> >>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>> >>>> www: >>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= >>>> , >>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e= >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>>>> On Jun 9, 2016, at 1:56 PM, Michael Barton <[email protected]> >>>>>> wrote: >>>>> >>>> >>>>> That's great news. Now to see if it also works under SIP. >>>> >>>> >>>>> I wanted to test this to see if it even worked before I tried wxPython >>>>> 3.0.3 and Glynn's hack for gettext. If it works under El Capitan SIP, >>>>> then on to the next steps. >>>> >>>> >>>>> Michael >>>> >>>>> ____________________ >>>> >>>>> C. Michael Barton >>>> >>>>> Director, Center for Social Dynamics & Complexity >>>> >>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>> >>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>> >>>>> Arizona State University >>>> >>>> >>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>> >>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>> >>>>> www: >>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= >>>>> , >>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e= >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>>>> On Jun 9, 2016, at 1:50 PM, Anna Petrášová <[email protected]> wrote: >>>> >>>> >>>>>> On Thu, Jun 9, 2016 at 4:30 PM, Michael Barton <[email protected]> >>>>>> wrote: >>>> >>>>>>> yet another GRASS 7.3 64 bit. >>>> >>>> >>>>>>> In this version (just uploaded a few minutes ago to the website), I've >>>>>>> built >>>> >>>>>>> wxPython from source and installed it in a non-system folder. I built >>>>>>> GRASS >>>> >>>>>>> against this local build of wxPython. There should be no problems for >>>>>>> SIP if >>>> >>>>>>> it is only the bundled dependencies. And this should not require any >>>> >>>>>>> additional packages like Anaconda. >>>> >>>> >>>>>> I tested it on old Yosemite (before SIP came) and works great, but I >>>> >>>>>> was wondering, since you decided to compile wxpython, could you use >>>> >>>>>> wxpython 3.0.3? It's not released, but a lot of bugs are supposed to >>>> >>>>>> be solved there. >>>> >>>> >>>>>> Thanks >>>> >>>> >>>>>> Anna >>>> >>>> >>>>>>> Let me know >>>> >>>>>>> Michael >>>> >>>>>>> ____________________ >>>> >>>>>>> C. Michael Barton >>>> >>>>>>> Director, Center for Social Dynamics & Complexity >>>> >>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>> >>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>> >>>>>>> Arizona State University >>>> >>>> >>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>> >>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>> >>>>>>> www: >>>>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= >>>>>>> , >>>>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e= >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>>>>> On Jun 6, 2016, at 12:37 PM, Michael Barton <[email protected]> >>>>>>> wrote: >>>> >>>> >>>>>>> OK. This means the /usr/local/... path is hardwired into the wxPython >>>>>>> Mac >>>> >>>>>>> binary itself. Not sure if this changes how we need to deal with this. >>>> >>>> >>>>>>> Michael >>>> >>>> >>>> >>>>>>> ____________________ >>>> >>>>>>> C. Michael Barton >>>> >>>>>>> Director, Center for Social Dynamics & Complexity >>>> >>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>> >>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>> >>>>>>> Arizona State University >>>> >>>> >>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>> >>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>> >>>>>>> www: >>>>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= >>>>>>> , >>>>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e= >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>>>>> On Jun 6, 2016, at 12:15 PM, Adam Dershowitz <[email protected]> >>>> >>>>>>> wrote: >>>> >>>> >>>>>>> I just downloaded it, and tried it. No luck. It still doesn’t find the >>>> >>>>>>> libraries that it needs: >>>> >>>> >>>>>>> '/Applications/GRASS-7.3.app/Contents/MacOS/grass.sh'; exit >>>> >>>>>>> Rebuilding Addon HTML manual pages index... >>>> >>>>>>> Rebuilding Addon menu... >>>> >>>>>>> Python 2.7.10 found. >>>> >>>>>>> Cleaning up temporary files... >>>> >>>>>>> Starting GRASS GIS... >>>> >>>>>>> Traceback (most recent call last): >>>> >>>>>>> File >>>>>>> "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/gis_set.py", >>>> >>>>>>> line 31, in <module> >>>> >>>>>>> from core import globalvar >>>> >>>>>>> File >>>> >>>>>>> "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/globalvar.py", >>>> >>>>>>> line 96, in <module> >>>> >>>>>>> import wx >>>> >>>>>>> File >>>> >>>>>>> "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/__init__.py", >>>>>>> line >>>> >>>>>>> 45, in <module> >>>> >>>>>>> from wx._core import * >>>> >>>>>>> File >>>>>>> "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core.py", >>>> >>>>>>> line 4, in <module> >>>> >>>>>>> import _core_ >>>> >>>>>>> ImportError: >>>> >>>>>>> dlopen(/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so, >>>> >>>>>>> 2): Library not loaded: >>>> >>>>>>> /usr/local/lib/wxPython-3.0.2.0/lib/libwx_osx_cocoau-3.0.0.2.0.dylib >>>> >>>>>>> Referenced from: >>>> >>>>>>> /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so >>>> >>>>>>> Reason: image not found >>>> >>>>>>> ERROR: Error in GUI startup. See messages above (if any) and if >>>>>>> necessary, >>>> >>>>>>> please report this error to the GRASS developers. >>>> >>>>>>> On systems with package manager, make sure you have the right GUI >>>>>>> package, >>>> >>>>>>> probably named grass-gui, installed. >>>> >>>>>>> To run GRASS GIS in text mode use the -text flag. >>>> >>>>>>> Exiting... >>>> >>>>>>> logout >>>> >>>>>>> Saving session... >>>> >>>>>>> ...copying shared history... >>>> >>>>>>> ...saving history...truncating history files... >>>> >>>>>>> ...completed. >>>> >>>>>>> Deleting expired sessions...none found. >>>> >>>> >>>>>>> [Process completed] >>>> >>>> >>>> >>>>>>> -- Adam >>>> >>>> >>>> >>>>>>> From: Michael Barton <[email protected]> >>>> >>>>>>> Date: Monday, June 6, 2016 at 2:50 PM >>>> >>>>>>> To: Adam Dershowitz <[email protected]> >>>> >>>>>>> Cc: GRASS developers <[email protected]>, GRASS users >>>> >>>>>>> <[email protected]>, Helena Mitasova <[email protected]>, >>>>>>> Anna >>>> >>>>>>> Petrášová <[email protected]> >>>> >>>>>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix >>>>>>> for SIP >>>> >>>>>>> problem - please test >>>> >>>> >>>>>>> Adam and others, >>>> >>>> >>>>>>> Yet another GRASS 64 bit. I just uploaded to the GRASS for Mac site. >>>> >>>> >>>>>>> I tried something else. I am hoping that this works with SIP enabled in >>>>>>> El >>>> >>>>>>> Capitan and does not add Anaconda as a required dependency. >>>> >>>> >>>>>>> If you have a chance, give it a try. >>>> >>>> >>>>>>> Michael >>>> >>>>>>> ____________________ >>>> >>>>>>> C. Michael Barton >>>> >>>>>>> Director, Center for Social Dynamics & Complexity >>>> >>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>> >>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>> >>>>>>> Arizona State University >>>> >>>> >>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>> >>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>> >>>>>>> www: >>>>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= >>>>>>> , >>>>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e= >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> _______________________________________________ grass-dev mailing list [email protected] http://lists.osgeo.org/mailman/listinfo/grass-dev
