Thats totally correct in what concerns those black holes/spots disapearing, besides that the results seem similar using r.shaded.relief or v.surf.rst as you suggested, in both GRASS plugin and GRASS. I normally dont work directly with grass, i find for now, since im a begginer, more easy to work with the grass plugin in QGIS. But i said to me well lets try and run these layers in GRASS. What i've found is that not only runing modules in GRASS makes those spots disappear instantanly but also just opening a layer that was previously "manipulated" in QGIS GRASS plugin, gives the same result. By the way this last image was using v.surf.rst through GRASS 6.4.0RC6
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